BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3178.p (542 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 443 e-125 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 420 e-118 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 402 e-113 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 385 e-108 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 375 e-105 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 443 bits (1140), Expect = e-125, Method: Compositional matrix adjust. Identities = 274/548 (50%), Positives = 373/548 (68%), Gaps = 23/548 (4%) Query: 1 MRFQDLSIGTRLGIAFATLVLIIIGIVILGLSRLSEVNESL----DHVVNDRYKKVAIIN 56 M+F++L IG RLG+AF L++++ + ++G+ RL +V ++ + + +R + I Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQ-QWIK 59 Query: 57 TISSNTDDIALSVRNRLISSNRTEAAQEKV---EADRLLAENTKLYEQLTQLIIRPKAKS 113 I +NT VR ++ Q+K+ E + A +K ++L L++ + K Sbjct: 60 GIETNTVRTFARVRT-------SDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKK 112 Query: 114 QLERVIQARSEYSAVMLEVIRLQELDDRDSAVEL---LRTKMAPLQKKYMKELDGLSDTQ 170 L V + R+ Y+A+ +V+ L+E EL + KM P Y++ ++ + + Q Sbjct: 113 LLATVAEKRATYTAIRDDVMNLREA----RGAELQNAIANKMKPAADAYIQSVEAVVNAQ 168 Query: 171 QELMNQAVVEAKENYENTRLTMVASGLVASIFAVLVALLISRGITSPLNQALSVAEQVAA 230 A Y++ R+ ++ GLVA +++A +++R IT PL+ A+SVA VA+ Sbjct: 169 INNFEDAKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVAS 228 Query: 231 GDLTSEIQQSQKDETGRLLQALAVMNQKLKDIVKEVRHGTDSMVTASTQIATGNLDLSSR 290 GDLT I KDETG+LLQAL MN L + +VR G D++ TAS QIA+GNLDLSSR Sbjct: 229 GDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSR 288 Query: 291 TEEQASSLEETASSMEELTSTVKQNAEHSRKASELALHSSQIAKQGGTVVEKVVQTMSSI 350 TEEQASSLEETASSMEELTSTVKQNA+++R+A++LA+ +S +A++GGTVV KVV TM I Sbjct: 289 TEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGI 348 Query: 351 NDSSNKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSATAA 410 N S+ KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AA Sbjct: 349 NTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA 408 Query: 411 KEIKELIQNSVDKVSSGSELVAEAGQTMNEVVASIQQVTNIVTEISEATREQSDGIEQVN 470 KEIK LI +SVDKV +GS+LVAEAG TM EVV S+++VT+I+ EI A++EQS GIEQVN Sbjct: 409 KEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVN 468 Query: 471 QAVMQMDQVTQQNAALVEEAAAAAQSLQDQAKRLSTVVSVFRIDALDHPQAPAAKV-VPH 529 QA+ QMDQVTQQNAALVEEAAAAA+SL +QA L+ VS+F++D + + A ++ V Sbjct: 469 QAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVATRLPVAA 528 Query: 530 STAGAKRE 537 S A A R+ Sbjct: 529 SNAPATRQ 536 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust. Identities = 275/532 (51%), Positives = 361/532 (67%), Gaps = 9/532 (1%) Query: 1 MRFQDLSIGTRLGIAFATLVLIIIGIVILGLSRLSEVNESLDHVVNDRYKKVAIINTISS 60 M+ +L IG RLG+AFA ++L++ ++++G+ RL EV ++ + ++ I + Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQWHAG 60 Query: 61 NTDDIALSVRNRLISSNRTEAAQEKVEADRLLAENTKLYEQLTQLIIRPKAKSQLERVIQ 120 N+ + A+ R+ S+N+ Q + E E TKL +L LI + K + V Sbjct: 61 NSAN-AIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGD 119 Query: 121 ARSEYSAVMLEVIRLQELDDRDSAVE-----LLRTKMAPLQKKYMKELDGLSDTQQELMN 175 R+ Y + EV +L+ D A E ++ +KM P + Y K + + D QQ Sbjct: 120 KRTVYMDIRKEVFKLKA--DGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFL 177 Query: 176 QAVVEAKENYENTRLTMVASGLVASIFAVLVALLISRGITSPLNQALSVAEQVAAGDLTS 235 +A E Y + R+ ++ G +A + L+A L+SR IT PL A+ VA VA GDL + Sbjct: 178 EAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRN 237 Query: 236 EIQQSQKDETGRLLQALAVMNQKLKDIVKEVRHGTDSMVTASTQIATGNLDLSSRTEEQA 295 I+ + DETG+LLQAL MN L V EVR G +++ TAS QIA GNLDLSSRTEEQA Sbjct: 238 RIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQA 297 Query: 296 SSLEETASSMEELTSTVKQNAEHSRKASELALHSSQIAKQGGTVVEKVVQTMSSINDSSN 355 SSLEETASSMEELTSTVKQNA+++R+A++LA+ +S +A++GG VV +VV TM IN S+ Sbjct: 298 SSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAK 357 Query: 356 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSATAAKEIKE 415 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK Sbjct: 358 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKT 417 Query: 416 LIQNSVDKVSSGSELVAEAGQTMNEVVASIQQVTNIVTEISEATREQSDGIEQVNQAVMQ 475 LI +SVDKV GS+LVAEAG TM EVV S+++VT+I++EI A++EQS GIEQVNQA+ Q Sbjct: 418 LIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQ 477 Query: 476 MDQVTQQNAALVEEAAAAAQSLQDQAKRLSTVVSVFRIDALDHPQAPAAKVV 527 MDQVTQQNAALVEEAAAAA+SL +QA +L+ VSVF++D + PA K V Sbjct: 478 MDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGV-AASTPATKTV 528 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 402 bits (1032), Expect = e-113, Method: Compositional matrix adjust. Identities = 260/540 (48%), Positives = 362/540 (67%), Gaps = 53/540 (9%) Query: 1 MRFQDLSIGTRLGIAFATLVLIIIGIVILGLSRLSEVNESLDHVVNDRYKKVAIINTISS 60 MR ++ IGTRLG+ F ++L++ + G+ RL +N + H+V+D Sbjct: 1 MRIANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLS---------- 50 Query: 61 NTDDIALSVRNRLISSNRTEAAQEKVEADRLLA-------ENTKLYE--------QLTQL 105 + S +N L+ ++ V A R LA E+ + ++ Q+T++ Sbjct: 51 ----MQKSAQNWLLGTS--------VNASRTLALVKASDPESQEFFQKAITAQSKQITEI 98 Query: 106 -------IIRPKAKSQLERVIQARSEYSAVMLEVIRLQELDDRDSAVELLRTKMAPLQKK 158 I K K V + RS Y + ++ ++ + A +++ TKM P Sbjct: 99 QKSIEDRINSDKEKELFAEVAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDA 158 Query: 159 YM---KELDGLSDTQQELMNQAVVEAKENYENTRLTMVASGLVASIFAVLVALLISRGIT 215 Y+ K + G + + +L ++++ + +Y + R+ ++ ++A + L+A ++ GIT Sbjct: 159 YVDSVKNVLGHYENEVKLADESITD---DYLSGRMALIIGAVIAILLGTLIAWRLTVGIT 215 Query: 216 SPLNQALSVAEQVAAGDLT--SEIQQSQKDETGRLLQALAVMNQKLKDIVKEVRHGTDSM 273 PL++AL VAE VA GDLT S++ ++Q DE G LL AL M L V ++R GTD++ Sbjct: 216 RPLHEALKVAESVAEGDLTARSDMAETQ-DEPGLLLSALGRMQANLVRTVTQIRLGTDTI 274 Query: 274 VTASTQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNAEHSRKASELALHSSQIA 333 TAS++IA+GNLDLSSRTE+QASSLEETASSMEELTSTVKQNA++SR+A++LA+ +S +A Sbjct: 275 ATASSEIASGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVA 334 Query: 334 KQGGTVVEKVVQTMSSINDSSNKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 393 +GG VV +VV TM +IN+S+ KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 335 VKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA 394 Query: 394 VVASEVRVLAQRSATAAKEIKELIQNSVDKVSSGSELVAEAGQTMNEVVASIQQVTNIVT 453 VVA+EVR LAQRSA AAKEIK LI +SV+KV +GS+LVAEAG TM+E+V +++V +I+ Sbjct: 395 VVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMA 454 Query: 454 EISEATREQSDGIEQVNQAVMQMDQVTQQNAALVEEAAAAAQSLQDQAKRLSTVVSVFRI 513 EI+ A++EQSDGIEQVNQAV QMDQVTQQNAALVEEAAAAA+SLQDQA+ L+ VSVFR+ Sbjct: 455 EITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 385 bits (988), Expect = e-108, Method: Compositional matrix adjust. Identities = 255/523 (48%), Positives = 342/523 (65%), Gaps = 16/523 (3%) Query: 3 FQDLSIGTRLGIAFATLVL---IIIGIVILGLSRLSEVNESLDHVVNDRYKKVAIINTIS 59 F+++++GT+L +F TL + I+ GI G+ + ++N+ + N ++ I + Sbjct: 2 FKNMTVGTKLISSFLTLSVAGAIVAGI---GIYNMGKINDKAGDIYNQELMGLSYIKDAN 58 Query: 60 SNTDDIALSVRNRLISSNRTEAAQEKVEADRLLAENTKLYEQLTQLIIRPKAKSQLERVI 119 + I + N L+S+ E K + LA + + L + AK+ + Sbjct: 59 IDLLFIGRARGNVLLSTTEEERTLNKENIKKYLASAKENLAKAQPLFVSDSAKALFAKYA 118 Query: 120 QARSEYSAVMLEVIRLQELDDRDSAVELLRTKMAPLQKKYMKELDG----LSDTQQELMN 175 +Y M + L + + L T MA + + LD LS ++ Sbjct: 119 TVSQDYEKEMWRALALADKEPLQQRSAELTTSMAQ-TRLHANTLDNVLTELSKQKEVRAA 177 Query: 176 QAVVEAKENYENTRLTMVASGLVASIFAVLVALLISRGITSPL----NQALSVAEQVAAG 231 QA VE ++ Y+++R MV ++++ +L+ +LI+R + L N A VA ++AAG Sbjct: 178 QAHVETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGEPNYAAGVAARIAAG 237 Query: 232 DLTSEIQQSQKDETGRLLQALAVMNQKLKDIVKEVRHGTDSMVTASTQIATGNLDLSSRT 291 DLT I KD+T L A+ M L IV +VR GTD++ TAS QIA GNLDLSSRT Sbjct: 238 DLTVAIDLRSKDQTSMLF-AMREMRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRT 296 Query: 292 EEQASSLEETASSMEELTSTVKQNAEHSRKASELALHSSQIAKQGGTVVEKVVQTMSSIN 351 EEQAS+LEETASSMEE+TSTVKQNAE+S++AS LA+H+S A +GG VV +VV TM SI Sbjct: 297 EEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSIT 356 Query: 352 DSSNKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSATAAK 411 +SS KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAK Sbjct: 357 ESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAK 416 Query: 412 EIKELIQNSVDKVSSGSELVAEAGQTMNEVVASIQQVTNIVTEISEATREQSDGIEQVNQ 471 EIK+LI +SV+KV +GS+LV +AG TM E+V IQ+V +I+++I+ A REQS GIEQVNQ Sbjct: 417 EIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQ 476 Query: 472 AVMQMDQVTQQNAALVEEAAAAAQSLQDQAKRLSTVVSVFRID 514 A+ QMD+VTQQNAALVEEAAAA+QSLQDQA LS +VSVF++D Sbjct: 477 AIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKLD 519 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 375 bits (962), Expect = e-105, Method: Compositional matrix adjust. Identities = 221/391 (56%), Positives = 284/391 (72%), Gaps = 4/391 (1%) Query: 141 RDSAVE-LLRTKMAPLQKKYMKELDGLSDTQQELMNQAVVEAKENYENTRLTMVASGLVA 199 R+ VE +L KM PL + K D L + Q + +++ + R+ V L+ Sbjct: 141 RNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATGYQDSQTLFHYFRIIAVVGVLLG 200 Query: 200 SIFAVLVALLISRGITSPLNQALSVAEQVAAGDLTSEIQQSQKDETGRLLQALAVMNQKL 259 I + A + R IT PL + L + +A+GDLTS I+ ++E G L+ L M ++L Sbjct: 201 LIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLMLGLQKMQKRL 260 Query: 260 KDIVKEVRHGTDSMVTASTQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNAEHS 319 D V +VR G+ ++ TA+T+IA GNLDLSSRTE+QA+SLEETASSMEELTSTVKQN +++ Sbjct: 261 TDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTVKQNTDNA 320 Query: 320 RKASELALHSSQIAKQGGTVVEKVVQTMSSINDSSNKIVDIISVIDGIAFQTNILALNAA 379 R+A++LA +S +A +GG VV VV TM +IN S+ KIVDII VIDGIAFQTNILALNAA Sbjct: 321 RQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTNILALNAA 380 Query: 380 VEAARAGEQGRGFAVVASEVRVLAQRSATAAKEIKELIQNSVDKVSSGSELVAEAGQTMN 439 VEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LI +SV+KV +G+ LVAEAG TM Sbjct: 381 VEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMT 440 Query: 440 EVVASIQQVTNIVTEISEATREQSDGIEQVNQAVMQMDQVTQQNAALVEEAAAAAQSLQD 499 EVV S+++VT+I++EI A++EQS GIEQVN A++QMD+VTQQNAALVE+AAAAA SL+D Sbjct: 441 EVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAAASSLRD 500 Query: 500 QAKRLSTVVSVFRIDALDHPQAPAAKVVPHS 530 QA LSTVVSVF++ H AP +VP + Sbjct: 501 QATNLSTVVSVFKLQG--HQSAP-QNLVPQA 528 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.311 0.124 0.306 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 669,179 Number of extensions: 20314 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 15 Length of query: 542 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 456 Effective length of database: 716,977 Effective search space: 326941512 Effective search space used: 326941512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)