BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3176.p
         (138 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095906|ref|YP_001100981.1| putative composite two componen...    64   2e-12
gi|134094677|ref|YP_001099752.1| putative two-component sensor k...    57   2e-10
gi|134093575|ref|YP_001098650.1| putative two-component hybrid s...    57   4e-10
gi|134096087|ref|YP_001101162.1| two-component system regulatory...    54   4e-09

>gi|134095906|ref|YP_001100981.1| putative composite two component
            regulatory (sensor histidine kinase and response
            regulator hybrid) transcription regulator protein
            [Herminiimonas arsenicoxydans]
          Length = 1969

 Score = 64.3 bits (155), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 60/94 (63%), Gaps = 3/94 (3%)

Query: 3    RLMEPTG---TGRILLVVEDNVEVSSLFSAVLAIEGYTVMEARNGMKALELMERHPIDVI 59
            R +EP     T  I++VV+D++ V  +   +L  EGY V+ A++G+ AL+ ++    DV+
Sbjct: 1833 RRVEPVQGLRTQHIVMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPDVM 1892

Query: 60   LTDLKMPVMDGLEFAQKVKADERFAHIPIVLLSA 93
            L D++MP MDG +  + ++ DER   IPI+++++
Sbjct: 1893 LVDIEMPRMDGFDLTRNIRDDERTRDIPIIMITS 1926


>gi|134094677|ref|YP_001099752.1| putative two-component sensor
           kinase (partial) [Herminiimonas arsenicoxydans]
          Length = 577

 Score = 57.4 bits (137), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 8   TGTGRILLVVEDNVEVSSLFSAVLAIEGYTVMEARNGMKALELMERHPIDVILTDLKMPV 67
            G  R LLVV+D      + + +L   G+ V EA +G + L+L++    D IL D+ M  
Sbjct: 365 AGPARTLLVVDDQPVQRHMLTGMLIPLGFNVREAASGNECLDLLQDFAPDAILLDIGMDG 424

Query: 68  MDGLEFAQKVKADERFAHIPIVLLSATPMTNSGEALQ--TFSALLTKPCPLEEVILTVN 124
           MDG E A++V+A    A +PI+ +SA    N  E L+     A + KP    E++L + 
Sbjct: 425 MDGWETARQVRAAGH-AAVPIIFISADLFENDPEKLRLAGCQAFVGKPVLESELMLALQ 482


>gi|134093575|ref|YP_001098650.1| putative two-component hybrid
           sensor and regulator [Herminiimonas arsenicoxydans]
          Length = 468

 Score = 57.0 bits (136), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 5   MEPTGTGRILLVVEDNVEVSSLFSAVLAIEGYTVMEARNGMKALELMERHPIDVILTDLK 64
           ++P    RILL+ EDNV  + + S +L +EG+T+  A +G   LE+ + +  D+IL D+ 
Sbjct: 343 LDPVPGCRILLI-EDNVSANEILSELLTMEGHTITSAFDGTSGLEMAQNNIYDIILCDIG 401

Query: 65  MPVMDGLEFAQKVK 78
           +P +DG E  ++++
Sbjct: 402 LPGIDGYEVVKRLR 415


>gi|134096087|ref|YP_001101162.1| two-component system regulatory
           protein [Herminiimonas arsenicoxydans]
          Length = 229

 Score = 53.5 bits (127), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 14  LLVVEDNVEVSSLFSAVLAIEGYTVMEARNGMKALELMERHPIDVILTDLKMPVMDGLEF 73
           +L++EDN ++ +   A L   GY +  A NG     L  +H  D ++ D+K+P +DGL  
Sbjct: 3   ILIIEDNADIVANLYAFLEPRGYVLDCAANGYAGFALAAQHEYDAVILDIKLPGIDGLTL 62

Query: 74  AQKVKADERFAHIPIVLLSATPMTNSGEALQTFSA--LLTKPCPLEEV 119
            +K++ DE     P+++L+A    +   A     A   L KP  L EV
Sbjct: 63  CRKMR-DELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEV 109


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 240,343
Number of extensions: 8326
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 5
Length of query: 138
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 65
Effective length of database: 759,812
Effective search space: 49387780
Effective search space used: 49387780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)