BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3173.p
         (400 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094546|ref|YP_001099621.1| succinyl-diaminopimelate desucc...    70   2e-13

>gi|134094546|ref|YP_001099621.1| succinyl-diaminopimelate
           desuccinylase [Herminiimonas arsenicoxydans]
          Length = 375

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 121/282 (42%), Gaps = 49/282 (17%)

Query: 15  QTLDILKTLIGFNTISRESN---------LGLIEWVRDYLERYGATTRLTYDTQRRKANL 65
           +TL + + LI  ++++ E           L  + +V + +E  G T            NL
Sbjct: 3   KTLALTEELIALSSVTPEDKGCQSRLIELLSPLGFVCETIESDGVT------------NL 50

Query: 66  FATLGDAGPGRFGTVFSGHTDVVPVTG--QNWDTDPFLAHVADGKLFGRGACDMKGFIAV 123
           +A  G A P     VF+GHTDVVP TG    W + PF+    DGKL+GRGA DMK  IA 
Sbjct: 51  WARKGTAQPL---LVFAGHTDVVP-TGPLDQWTSPPFVPTQRDGKLYGRGAADMKTSIAA 106

Query: 124 CLARLPAIAQDRLHT-PLH-----FSFSYDEE-VGCLGVRELLADLQRNDIKPTGVIIGE 176
            +      A++ +H  P H     F  + DEE     G   +   L+    +    ++GE
Sbjct: 107 MVVA----AEEFVHAHPDHKGSIGFLITSDEEGPATDGTVIVCNALKARGEQLDYCVVGE 162

Query: 177 PT---MMQPVIAH--KGKRSYRCSVHGHAAHSSCPHLGINSIDYAAMMQLKIREIALRVR 231
           PT   ++   I +  +G  S + +V G   H + P L  N I   A        +A  V 
Sbjct: 163 PTSSDVLGDTIKNGRRGSMSGKLTVKGIQGHIAYPQLARNPIHQCA------PALAELVA 216

Query: 232 HSEVQDYDFDVPYSSIVTTLSNGGNAPNIIPDKAEFVFEHRF 273
                  ++ +P S  V+ +  G  A N+IP      F  RF
Sbjct: 217 EKWDDGNEYYLPTSWQVSNMHGGAGASNVIPGNVVIDFNFRF 258


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 838,813
Number of extensions: 37278
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 316
Effective length of database: 723,567
Effective search space: 228647172
Effective search space used: 228647172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)