BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3169.p (704 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 249 3e-67 gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 109 5e-25 gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 94 3e-20 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 249 bits (636), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 197/701 (28%), Positives = 336/701 (47%), Gaps = 42/701 (5%) Query: 34 QADDSALPPITVTGGSDTKQLAEKVSGGALGERSELDTPFSTRAVTSDEIVGRQASSLAE 93 + ++ LP + V S++ +A S G + +TP S +T +++ R S + Sbjct: 28 ETSENVLPEVVVMSDSESDGIARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSATD 87 Query: 94 VLKYDASVTNISPANGTHPATVAVRGLRLDDLNGYKIDGLANINRGTEMPLEMFDQVEVL 153 +KYDASV N A G ++RG LD + Y+ DG+ + + +P+E ++ EVL Sbjct: 88 AVKYDASVQNAYNAVGL-ADWFSIRGFTLDMGSNYRKDGMVVLAH-SMIPMENKERFEVL 145 Query: 154 KGLSGFMYGFGSPGGIVNYVSKRPTDDHFLATDLGYATGGTWKEHVDAGGRFGNDQRFGY 213 KGL+G G S GGI+NYV KRPT++ + L + GT VD GGR +D+RFGY Sbjct: 146 KGLAGLQVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGGR-SDDKRFGY 204 Query: 214 RVNLVNENGDIAADHGGIN--RQAIGASFDARLTKD--LTVTLDAIYQRRIASGGTDVIV 269 R+N DI + G N RQ + +FD RL+ L + LD ++ +++ G ++ Sbjct: 205 RINAAG--ADIKSYVQGSNGERQFVSGAFDWRLSPKALLQIDLDYHHKSQLSVPGFQLLG 262 Query: 270 SGFKVPNALDGASRLYSNGSSTDV--DYRLVTLSADYRLSDDWKAT-----FAVRHSESV 322 ++P + + L + S V D + + +Y L++ W T F +R ++V Sbjct: 263 PAQRIPTGVSAKTMLNNQSWSLPVTDDTNNLGIKFEYELNEQWHTTLQANKFELRRDDAV 322 Query: 323 RVYKK------DQYYITSNSGNYRDRVTSEYHGYEFNEAQAMVQGKVRTGWLQHELVFGA 376 + Y + N D + + QAM+QGK G ++H+L G Sbjct: 323 ALASGCVAEGLSPGYCADGTFNMYD-LRRDNDKRTVMSTQAMLQGKFNAGTIKHDLTLGM 381 Query: 377 MAQNLLSTSSVNTPKPYIGTGNIYAPTI--YSVGSINYSGGTYRDEKTTQSAFFASDTMK 434 N + N GTG+IY P ++G N +DE + + F D + Sbjct: 382 STMNRRDNYA-NFLFESAGTGSIYYPKYNPLTLGPTNPVSLRRKDE---ERSVFVQDVLT 437 Query: 435 FDDRWSVLAGVRYTNYGDTAYTTTNATSAKFTANPMSPTAAVMYKPRADTTAYVSYAEAL 494 +D++ + AG+RYT T +T++ + + P A+++ P+++ + Y +Y++ L Sbjct: 438 LNDKFKLHAGMRYTQLQRTQFTSSGGLFRHTDKDFLLPNVALVFSPQSNWSIYGTYSQGL 497 Query: 495 EQSASAPTTTLNANQTFAPIKSKQAEVGVKTE-HEGWNGSLALFRIERGSQYINSANIYV 553 E A P+ +N P KS+Q E+G+K + + + + ALF+I R + Y + N YV Sbjct: 498 EPGAEVPSGLVNEETVLDPNKSRQVEIGIKADLSQDISVAAALFQIHRDNNYTSGLN-YV 556 Query: 554 ADGQSVYRGVELNGSVQMTRDLSLDGSLMVLGSEMTHAA-AAVNGKRAVGAADMQAGAQL 612 G+ V+RG+EL+ + TR+L+L S+ L + + A V GKR +++ + Sbjct: 557 TAGKEVHRGLELSAQGRATRNLTLGASMTTLQAFAENTGDARVEGKRIGNVPVLKSAVFM 616 Query: 613 SYRVPTLPGLSLHAGAQYIGTMALDSANANM------LSPYSLFDAGLNYFTYIGGHLTT 666 Y +P +P L L+A Y + + NA + + Y + + G Y T + G TT Sbjct: 617 DYTLPQMPALKLNAMWIYSSSKVF-APNAQISELNKKVDGYHVLNVGAQYKTKVSGTKTT 675 Query: 667 WSANITNLANRKYWTYYQET---YLNVGAPRTLNLNVRAEF 704 + I N+ ++ YW YL GAPR L+ + +F Sbjct: 676 FRFGIDNVFDKFYWGDASNAYGGYLIPGAPRVFRLSAQFDF 716 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 178/712 (25%), Positives = 285/712 (40%), Gaps = 121/712 (16%) Query: 33 AQADDSALPPITVTGGSDTKQLAEKVSGGALGER-------SELDTPFS-----TRAVTS 80 A ++S+ P +T + + E +G +G R ++ DT + VT Sbjct: 44 ASQNESSAPAVTTLPAVNVSGVQETATGPVIGYRATRSSTATKTDTSLAETLQAVTVVTR 103 Query: 81 DEIVGRQASSLAEVLKYDASVTNISPANGTHPATVAVRGLRLDDLNGYKIDGLANIN--- 137 D+IV + A++L + L Y A V + + + +V VRG D IDGL N Sbjct: 104 DQIVDQGATNLQDALTYAAGVRSDAYGLDSRTDSVLVRGASPD----VYIDGLRQANDYY 159 Query: 138 ----RGTEMPLEMFDQVEVLKGLSGFMYGFGSPGGIVNYVSKRPTDDHFLATDLGYATGG 193 R LE ++EVL+G + YG GS GG+VN VSKRP + + G Sbjct: 160 TSAARPDPFTLE---RIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQGEVGVQLGNFG 216 Query: 194 TWKEHVDAGGRFGNDQRFGYRVNLVNENGDIAADHGGINRQAIGASFDARLTKDLTVTLD 253 + D G D+++ YR+ V N D D+ +R I S + ++TL Sbjct: 217 RKQLQADVTGPLTEDKQWLYRLVAVARNADTQVDYVKDDRTLIAPSLTWKPNGVTSLTLQ 276 Query: 254 AIYQR-RIASGGTDVIVSGFKVPNA--LDGASRLYSN-GSSTDVDYRLVTLSADYRLSDD 309 +YQR R S + +G PN + SR G D D + + +++L+D+ Sbjct: 277 GLYQRDRTGSTSQFLPWAGMLTPNVNGMIPTSRFIGEPGDRYDTDRQSLGYLFEHQLNDN 336 Query: 310 WKATFAVRHSESVRVYKKDQYYITSNSGN-------------YRDRVTSEYHGYEFNEAQ 356 W TF +V +Y S S + R+ Y + + Sbjct: 337 W--TFRQNFRYAVNEVDYFTHYADSFSTDPSTGLPGGWAIDPVNQRLIGRYADDSITKVK 394 Query: 357 -----AMVQGKVRTGWLQHELVFGAMAQNLLSTSSVNTPKPYIG--TGNIYAPTIYSVGS 409 +Q K++TG LQH+L+ G L T + G T ++YAP +Y G Sbjct: 395 IATIDQHLQAKLQTGPLQHDLLAG-----LDYTRYQRDRQSGFGMDTIDVYAP-VYGNGV 448 Query: 410 INYSGGTYRDEKTT---QSAFFASDTMKFDDRWSVLAGVRYTNYGDTAYTTTNATSAKFT 466 + T D+ + Q + D +K W V AG+R+ + + + S T Sbjct: 449 V----ATLADDPQSVQRQIGLYLQDQIKIGKNWIVSAGLRHDRVNNALAGSEDEESRATT 504 Query: 467 ANPMSPTAAVMYKPRADTTAYVSYAEALEQSASAPTTTLNA-NQTFAPIKSKQAEVGVKT 525 VMY + YVSY+E+ P NA +Q F P++ +Q E GVK Sbjct: 505 KR-----VGVMYLLENGWSPYVSYSESF-----TPVAGTNAYDQRFKPVRGEQIEGGVK- 553 Query: 526 EHEGWNG----SLALFRI-ERGSQYINSANIY--VADGQSVYRGVELNGSVQMTRDL--- 575 + NG + A+++I E+ + +N + GQ+ RGVEL +T + Sbjct: 554 -YMPVNGHSQFTAAIWKIDEKNKSTTDPSNPLNQIQVGQTKNRGVELEWKASITPTIDVL 612 Query: 576 ------SLDGSLMVLGSEMTHAAAAVNGKRAVGAADMQAGAQLSYRVPTLPGLSLHAGAQ 629 LD L E+ AA GK + + + G +L AGA+ Sbjct: 613 AHYNYTDLDEQL----DEVPRHQAAAWGK-------------WRFSIGGVSGFALGAGAR 655 Query: 630 YIGTMALDSANANMLSPYSLFDAGLNYFTYIGGHLTTW--SANITNLANRKY 679 Y+ + A +L DA L++ T W + N+ NL ++ Y Sbjct: 656 YMSS--FRDGVAPTTPSVTLLDALLSWDT------MNWRYALNVNNLTDKVY 699 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 179/753 (23%), Positives = 314/753 (41%), Gaps = 101/753 (13%) Query: 5 HIASFRLTTMQRALLS----LGWLLGSAYPLLAQADDSALPPITVTGGSDTKQLAEKVSG 60 HI S + +R+ S + +++ + AQ S LP + V G +++ + A+ VS Sbjct: 3 HIKSRKHPAARRSSCSTAVAMAFVVLPGTTVYAQQVTSVLPEVEVHGTTESYK-ADTVSS 61 Query: 61 GALGERSELDTPFSTRAVTSDEIVGRQA-SSLAEVLKYDASVTNISPA-NGTHPATVAVR 118 + L T V E+V +Q ++L E L+ V S NG A+ Sbjct: 62 PKFTQ--PLLNTTQTITVIKKELVQQQGGATLTEALRNTPGVGTFSLGENGNTNTGDAIY 119 Query: 119 GLRLDDLNGYKIDGLANINRGTEMPLEMF--DQVEVLKGLSGFMYGFGSPGGIVNYVSKR 176 D + +DG+ ++ + ++F +Q+EV KG +G G GSP G +N +K+ Sbjct: 120 MRGFDTSSSIFVDGVRDLG---SISRDIFNIEQIEVTKGPAGADTGRGSPTGSINLSTKQ 176 Query: 177 PTDDHFLATDLGYATGGTWKEHVDAGGRFGNDQRFGYRVNLVNENGDIAA-DHGGINRQA 235 PT + + +G + D D +R+NL+ ++ +A D +RQ Sbjct: 177 PTMKEAYSGSVSVGSGDYKRITADLNKPLDFDGGAAFRINLLKDDSGVAGRDIVKNDRQG 236 Query: 236 IGASFDARLTKDLTVTLDAIY--QRRIASGGTDVI-VSGFKVPNA--------------- 277 I A+F L + L+ ++ Q I GG I + G+ P Sbjct: 237 IAAAFAFGLKTNTRTYLNYLHVDQSNIPDGGVPTIGLPGYSSPVQAANPAATPPVVAIPA 296 Query: 278 ---LDGASRLYSN------GSSTDVDYRLVTLSADYRLSDDWKATFAVRHSESVRVYKKD 328 L+GASR+ S+ G DV ++T ++ +S D V+ + R K Sbjct: 297 RPFLNGASRVNSSNFYGTVGDFDDVTADMLTARVEHDISPD------VKLQNTTRFGKTS 350 Query: 329 QYYITSN---------SGNYRDRVT-----SEYHGYEFNEA---QAMVQGKVRTGWLQHE 371 Q Y+ + + N D T S + NE Q + K TG ++H Sbjct: 351 QNYLLTGFMGSAPNLLTPNPADPTTWTLARSSQMKDQTNEIFSNQTNLTAKFDTGAVKHS 410 Query: 372 LVFG----AMAQNLLSTSSVNTPKPYIGTGNIYAPTIYSV--GSINYSGGTYRDEKTTQS 425 LV G + Q L + + T I N+Y P Y V G GT + +T Sbjct: 411 LVTGVELSSEKQRSLGYAGLGT----ISAANLYNPNPYLVRTGYNPVGNGTNSEGRTNTL 466 Query: 426 AFFASDTMKFDDRWSVLAGVRYTNYGDTAYTTTNATSAKFTANP----MSPTAAVMYKPR 481 + + DT++ +W + GVR +Y DT Y ++ T N ++ +YKP Sbjct: 467 SVYLFDTLELSPQWQINGGVRVDHY-DTKYESSTLNVRNATLNKSGTLLNWKLGGLYKPT 525 Query: 482 ADTTAYVSYAEALEQ---SASAPTTTLN--ANQTFAPIKSKQAEVGVKTE--HEGWNGSL 534 D++ YVSYA + + S A ++ N AN + P +++ AE+G K + + + Sbjct: 526 EDSSLYVSYATSKQPPGGSNFALSSNANSAANVNYDPQETRTAEIGAKWDLLDKRLGLTT 585 Query: 535 ALFRIERGSQYI-NSANIYVADGQSVYRGVELNGSVQMTRDLSLDGSLMVLGSEMTHAAA 593 A++R + ++ N+ + + G+ GVEL ++T + + +++T A A Sbjct: 586 AIYRTDVKNEIEGNATDGFTQTGKKRVEGVELGVVGEITSAWQVSAGYTRMRTDVT-AGA 644 Query: 594 AVN--GKRAVGAADMQA-GAQLSYRVPTLPGLSLHAGAQYIGTMALDSANA----NMLSP 646 VN G + QA A +Y++P G ++ GA+++ + A + Sbjct: 645 IVNQDGTSGLSYTPKQAFTAWTTYKLPG--GFTIGGGARFVDALHKPKDGAVGTPQFVES 702 Query: 647 YSLFDAGLNYFTYIGGHLTTWSANITNLANRKY 679 Y ++DA +Y L N+ NLA++ Y Sbjct: 703 YWVYDAMASYEVSKNVSL---QLNLYNLADKDY 732 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.130 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,332,172 Number of extensions: 56821 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 3 Length of query: 704 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 616 Effective length of database: 710,387 Effective search space: 437598392 Effective search space used: 437598392 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)