BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3165.p (483 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094857|ref|YP_001099932.1| coproporphyrinogen dehydrogenas... 665 0.0 gi|134094858|ref|YP_001099933.1| coproporphyrinogen dehydrogenas... 660 0.0 gi|134095309|ref|YP_001100384.1| coproporphyrinogen III oxidase ... 112 5e-26 >gi|134094857|ref|YP_001099932.1| coproporphyrinogen dehydrogenase [Herminiimonas arsenicoxydans] Length = 465 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/465 (65%), Positives = 382/465 (82%), Gaps = 4/465 (0%) Query: 23 LRKMDQRGPRYTSYPTADRFSSDFAVTDYLHAVSDRRNMSAWRALSLYLHIPFCDTICYY 82 +RK+ Q GPRYTSYPTAD FS F+ DYL V R LSLY+HIPFC+++C+Y Sbjct: 1 MRKLIQLGPRYTSYPTADSFSDAFSYRDYLQTVVGLRTRGGMWPLSLYVHIPFCESVCHY 60 Query: 83 CACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQVEQLHFGGGTPTYLSDEQMSDLM 142 C+CNK+VT++R+KAA YLSYLK EI MQG+LF+GMNQ+E+LH GGGTPTYL+D QM +LM Sbjct: 61 CSCNKVVTRDRSKAATYLSYLKHEIEMQGNLFAGMNQIEKLHIGGGTPTYLNDAQMGELM 120 Query: 143 DHIRHCFTLAPDHVGEYSIEIDPRTVSVARVHKLRQQGFNRISLGVQDFDPEVQLAVNRV 202 H+R F A D GEY+IE+DPRTV+V R+H LR+QGFNRIS+GVQDFDP+VQ AVNR+ Sbjct: 121 AHLRRHFRFASDFDGEYAIEVDPRTVTVERIHALRKQGFNRISIGVQDFDPDVQQAVNRI 180 Query: 203 QSEEQTLEIIQAARQAGFRSVSIDLIYGLPKQNVMSMSRTLAKVIAASPDRIAVYNYAHM 262 QSE+ TL II+AAR+A FRSVSIDLIYGLPKQNV++M++TL KVI ASPDRIAVYNY H Sbjct: 181 QSEQDTLNIIRAAREACFRSVSIDLIYGLPKQNVITMAQTLNKVINASPDRIAVYNYVHR 240 Query: 263 PQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLTGAGYVYIGMDHFAKPTDDLAIAQQQGR 322 P +FK QR+I E+DLPS D++L+M SLCIR+LT AGYVYIGMDHFAKP+DDLAIAQ+QGR Sbjct: 241 PNMFKPQRRIDEDDLPSLDARLNMFSLCIRRLTDAGYVYIGMDHFAKPSDDLAIAQRQGR 300 Query: 323 LHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTLDGYYARLENSTLPIARGIQLGM 382 LHRNFQGYS+H+E +LVA GVS ISAV +YS+N KTLD YY R+E + LPI G++L M Sbjct: 301 LHRNFQGYSSHAEHNLVAFGVSGISAVAATYSENAKTLDEYYERIEQNELPIVTGVKLSM 360 Query: 383 DDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFASEMEKLKQLEADGLISIEPEWITV 442 DD+LRR+IIQ LMCNFELSI+S+E+AYPI F+ YFA+E++KL +LE +GL++++ EWI+V Sbjct: 361 DDLLRRIIIQMLMCNFELSIDSIELAYPITFKTYFAAELDKLHELEDNGLVTVDDEWISV 420 Query: 443 EPKGRLLIRNICMVFDRYLTQDREK----AASQNKDAPQRYSQTV 483 PKGRLLIRN+CMVFDRYL E A+++ + P RY++ + Sbjct: 421 TPKGRLLIRNVCMVFDRYLNTACEAKTGGASAKTETRPLRYTKKI 465 >gi|134094858|ref|YP_001099933.1| coproporphyrinogen dehydrogenase [Herminiimonas arsenicoxydans] Length = 476 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/466 (66%), Positives = 373/466 (80%), Gaps = 5/466 (1%) Query: 18 MNKAVLRKMDQRGPRYTSYPTADRFSSDFAVTDYLHAVSDRRNMSAWRALSLYLHIPFCD 77 + ++RK++Q GPRYTSYPTADRFS F + DY AV+ R + RALSLYLHIPFC+ Sbjct: 16 FDAPLIRKLNQLGPRYTSYPTADRFSGAFGIADYERAVAGVRAKTEKRALSLYLHIPFCN 75 Query: 78 TICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQVEQLHFGGGTPTYLSDEQ 137 T+CYYC CNKIVT++R+KA YL YLKRE++MQG LF+GMNQ+EQLHFGGGTPTYLSDEQ Sbjct: 76 TVCYYCGCNKIVTRDRSKAVTYLDYLKREVAMQGRLFAGMNQIEQLHFGGGTPTYLSDEQ 135 Query: 138 MSDLMDHIRHCFTLAPDHVGEYSIEIDPRTVSVARVHKLRQQGFNRISLGVQDFDPEVQL 197 M DLM H+R FT APD VGEYSIEIDPRTVS R+H LR+QGFNR+SLGVQDFDP VQ Sbjct: 136 MDDLMAHLRRWFTFAPDAVGEYSIEIDPRTVSRERIHTLRRQGFNRLSLGVQDFDPVVQK 195 Query: 198 AVNRVQSEEQTLEIIQAARQAGFRSVSIDLIYGLPKQNVMSMSRTLAKVIAASPDRIAVY 257 AVNR+Q E+QTL+II AAR A FRSVS+DLIYGLPKQ + ++ +TL KVIAA PDRIA+Y Sbjct: 196 AVNRIQPEQQTLDIIAAARAADFRSVSVDLIYGLPKQTLTTIGQTLDKVIAADPDRIAIY 255 Query: 258 NYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLTGAGYVYIGMDHFAKPTDDLAIA 317 NYAHMP LFK QR+I EEDLP AD+KL+ML LCIR+L A Y+YIGMDHFAKP DDLA+A Sbjct: 256 NYAHMPHLFKPQRRIAEEDLPDADTKLEMLFLCIRRLNEAAYIYIGMDHFAKPGDDLAVA 315 Query: 318 QQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTLDGYYARLENSTLPIARG 377 Q++GRLHRNFQGYSTH+E DLV+CGVSAISA+G +YSQN KTLD YY ++ + LP+ RG Sbjct: 316 QREGRLHRNFQGYSTHAEADLVSCGVSAISAIGPTYSQNVKTLDVYYDHIDRNELPVVRG 375 Query: 378 IQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFASEMEKLKQLEADGLISIEP 437 I+L DD+LRR +IQRLMCNFELSI + Y I F YFA E+EKL+ ++ DGLI+++ Sbjct: 376 IELKADDLLRRQLIQRLMCNFELSIADIAQTYQIDFASYFAPELEKLRVMQEDGLITLDE 435 Query: 438 EWITVEPKGRLLIRNICMVFDRYLTQDREKAASQNKDAPQRYSQTV 483 +W+ V KGRLLIRNICM FD YL Q R P RYS+T+ Sbjct: 436 DWLRVTLKGRLLIRNICMTFDTYLNQKRAAEPE-----PLRYSKTI 476 >gi|134095309|ref|YP_001100384.1| coproporphyrinogen III oxidase [Herminiimonas arsenicoxydans] Length = 414 Score = 112 bits (279), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 136/300 (45%), Gaps = 23/300 (7%) Query: 47 AVTDYLHAVSDRRNMSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKRE 106 A T YL + N++A LSLY+H P+C C YC N YLS L+ + Sbjct: 23 AATAYLQPGA--LNLTALPPLSLYVHFPWCVKKCPYCDFNSHEATGGFPEDEYLSALRAD 80 Query: 107 ISMQGSLFSGMNQVEQLHFGGGTPTYLSDEQMSDLMDHIRHCFTLAPDHVGEYSIEIDPR 166 + L G ++ + GGGTP+ LS + + L+ IR L D E ++E +P Sbjct: 81 LEQALPLIWG-RKIYTIFIGGGTPSLLSAKGLDRLLSDIRTLLPL--DGAVEITMEANPG 137 Query: 167 TVSVARVHKLRQQGFNRISLGVQDFDPEVQLAVNRVQSEEQTLEIIQAARQAGFRSVSID 226 T + R G NR+S+G+Q F+ A+ R+ ++ + A A F + ++D Sbjct: 138 TFEAEKFKSYRSSGVNRLSIGIQSFNARHLQALGRIHDGDEARRAVDIA-MANFENFNLD 196 Query: 227 LIYGLPKQNVMSMSRTLAKVIAASPDRIAVYNYAHMPQ-LFKTQRQIKEEDLPSADSKLD 285 L+Y LP Q + + + IA +P +++Y+ P +F + +P D+ D Sbjct: 197 LMYALPSQTLEEARQDVQTAIAFAPPHLSLYHLTMEPNTVFAKYPPV----VPDDDASAD 252 Query: 286 MLSLCIRQLTGAGYVYIGMDHFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSA 345 M + + T AGY + + +A+P ++Q R + N+ + D + G A Sbjct: 253 MQDMIAEETTAAGYQHYEVSAYAQP-------KRQARHNLNYWQFG-----DYLGIGAGA 300 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 873,830 Number of extensions: 34507 Number of successful extensions: 97 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 3 Length of query: 483 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 398 Effective length of database: 720,272 Effective search space: 286668256 Effective search space used: 286668256 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)