BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3164.p
         (285 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094856|ref|YP_001099931.1| hypothetical protein HEAR1649 [...   228   3e-61

>gi|134094856|ref|YP_001099931.1| hypothetical protein HEAR1649
           [Herminiimonas arsenicoxydans]
          Length = 256

 Score =  228 bits (581), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/271 (50%), Positives = 174/271 (64%), Gaps = 24/271 (8%)

Query: 13  LVGLMGSVHCIGMCGGIVGALSSAAPARPTPAPTLASALASQAASPLPRVIPIRIAGSAQ 72
           ++GL+G +HCIGMCGGIV ALS+A   RP P   +A+   S                  Q
Sbjct: 1   MIGLLGGLHCIGMCGGIVSALSAAQAPRPFPVAVVAAETMSN---------------GMQ 45

Query: 73  VQAFGQDLVRVLGYNLGRLSSYALAGALAGGIAAGLLRGADVLGWLAPAQTLAYVITNLV 132
             AF  + +RV  YN GR+ SYA+AGAL GG+A G+   A+    LA  Q   Y + NL+
Sbjct: 46  TAAF-DNALRVTAYNAGRIGSYAVAGALVGGLADGMRSFAN----LAMLQVGGYWLANLM 100

Query: 133 LVLLGLYLTQWWTGMSRMEQLGSGLWARLRPHAARLVPVDTPAKALLLGSLWGWLPCGMV 192
           L++LGLYL   W G++R+E +G  LW R++P    L+P+D   KA  LG LWGWLPCGMV
Sbjct: 101 LIVLGLYLMDAWRGLARLEAVGQILWRRVQPLMKFLLPMDNLGKAFALGGLWGWLPCGMV 160

Query: 193 YSALLTALMAGSAVQGALTMLAFGTGTLPVLLVAGLSGARLRQLAARPAVRRVAGVIVLA 252
           YS LLTA+ +GSA+ GAL MLAFG GTLP +L  GL G RLR LA +  VR   G+IVLA
Sbjct: 161 YSVLLTAMFSGSALSGALVMLAFGLGTLPAMLSLGLVGVRLRMLAQKRKVRIACGLIVLA 220

Query: 253 FGILGLLRAAEIGGL--GIARGWIDVFCVSP 281
           FG+LGL+RAA  GGL   I+ G +DVFC++P
Sbjct: 221 FGVLGLVRAA--GGLSGDISGGLLDVFCITP 249


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 438,906
Number of extensions: 14326
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 204
Effective length of database: 733,452
Effective search space: 149624208
Effective search space used: 149624208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)