BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3158.p
         (310 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094849|ref|YP_001099924.1| putative cbb3-type cytochrome C...   462   e-131

>gi|134094849|ref|YP_001099924.1| putative cbb3-type cytochrome C
           oxidase subunit III [Herminiimonas arsenicoxydans]
          Length = 312

 Score =  462 bits (1189), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 217/315 (68%), Positives = 257/315 (81%), Gaps = 9/315 (2%)

Query: 1   MADFTNGFWNLWIIVLTVLGIAGCALLLWQQSSWKVKKGDQPIPGS-----TTGHVWDED 55
           M+DFTNGFW+++I VLT+LGI GC LLLW QS  K+K+     PGS     TTGHVWDED
Sbjct: 1   MSDFTNGFWSIYITVLTLLGIFGCGLLLWSQSKVKIKRE----PGSNQQMETTGHVWDED 56

Query: 56  LTELNNPLPRWWMWLFYLTIFFSVGYLIAYPGLGNLPGTLGWRSTGEHDADVKKAEAKYG 115
           LTELN P+PRWWMWLFY+TI F++ YL  YPGLG   G L W+S+GE++ ++KKA+A+YG
Sbjct: 57  LTELNTPMPRWWMWLFYITIVFALAYLFLYPGLGTYAGKLDWKSSGEYETELKKADAEYG 116

Query: 116 PLFDNYLKQDLKVVAADPQAHAIGERLFLTYCAQCHGSDARGNKGFPNLTDNDWLHGGTP 175
           PLF  Y +QD+K VAADPQA  IGERLFLTYCAQCHGSDARGNKGFPNLTD DWL+GG P
Sbjct: 117 PLFSKYQQQDMKAVAADPQAQLIGERLFLTYCAQCHGSDARGNKGFPNLTDKDWLYGGEP 176

Query: 176 EIIKETIMKGRHGVMPPMAAAVGSAQDVDNVANYVLSLSNSAHDPIKAELGKPKFAACAA 235
           +IIK TI+KGRHG+MPPM AAVGS  D++N+A+YVLSLS S  DPIK   GKPKFAACAA
Sbjct: 177 DIIKTTIIKGRHGIMPPMGAAVGSDTDIENLAHYVLSLSGSNSDPIKTVFGKPKFAACAA 236

Query: 236 CHGPGGVGNQAIGAPNLSDKIWLYGGSIDTIKETINKGRDNTMPAFGEFLGEPKVHVLAA 295
           CHG  G GNQA+GAPNL+DK+WL+GGS+++I ETI KGRDN MPAF +FLG+ KVHVLAA
Sbjct: 237 CHGADGKGNQALGAPNLTDKVWLHGGSVNSIMETIRKGRDNMMPAFDDFLGDAKVHVLAA 296

Query: 296 YVWSLSNKPSNAAAK 310
           YVWSLSN     +A+
Sbjct: 297 YVWSLSNPQKVESAQ 311


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.137    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 717,241
Number of extensions: 32239
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 229
Effective length of database: 733,452
Effective search space: 167960508
Effective search space used: 167960508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)