BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3156.p
         (180 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094847|ref|YP_001099922.1| hypothetical protein HEAR1639 [...   160   5e-41

>gi|134094847|ref|YP_001099922.1| hypothetical protein HEAR1639
           [Herminiimonas arsenicoxydans]
          Length = 179

 Score =  160 bits (404), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 105/163 (64%), Gaps = 5/163 (3%)

Query: 13  PWYRHRWPWLLMSGP-AVVVAGIFTAWLAISRADALVADDYYKQGKAINKDLRRDHEAQR 71
           PWY+HRWPWLLM GP  VV+AG  T W+A+SR DALV DDYYKQGKAIN+DLRRD  A  
Sbjct: 16  PWYKHRWPWLLMLGPFIVVIAGSITIWIAVSRQDALVVDDYYKQGKAINQDLRRDRVATD 75

Query: 72  LGASIGIAYDPAAAVLRGRLQMRQTPAAGEEGRTLILNLVHPTQPAKDRTLMVQTAADGS 131
           LG      YD    +L G +      A G     L + L+H T P KD  L++Q   +G+
Sbjct: 76  LGVRFSAQYDVPTRMLTGSVANTARQATG----NLNMRLIHATIPEKDLVLLLQPDQNGN 131

Query: 132 FSLSLPEMEQARWRLVAEDGSHLWRLHGNWAWPQQRSIEMNAE 174
           F+++LP +E  RW+++ E+    WRL+G+W+WP +R I + A+
Sbjct: 132 FAVALPVLEMGRWQVLVENEQRDWRLNGHWSWPAERKIVIEAD 174


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.131    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 374,166
Number of extensions: 14693
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 104
Effective length of database: 749,927
Effective search space: 77992408
Effective search space used: 77992408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)