BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3154.p
         (285 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094845|ref|YP_001099920.1| aerobic, anaerobic respiration,...   369   e-103
gi|134095514|ref|YP_001100589.1| aerobic, anaerobic respiration,...   362   e-101

>gi|134094845|ref|YP_001099920.1| aerobic, anaerobic respiration,
           osmotic balance transcriptional regulator [Herminiimonas
           arsenicoxydans]
          Length = 251

 Score =  369 bits (947), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/253 (70%), Positives = 210/253 (83%), Gaps = 4/253 (1%)

Query: 20  MTQCSPLTSAREAAASSALR-SCTACGMHQLCLPMGLDESDMKRLDKIIGRR-KVARDDF 77
           MT  SP  S   +   SA+R SC  C MHQLCLPMGL E+D+ +LD+IIGRR KV RD +
Sbjct: 1   MTNPSPDLSP--SIIVSAVRASCATCSMHQLCLPMGLGENDIDKLDQIIGRRRKVPRDGY 58

Query: 78  LYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLGMDAISTEHHQCDAVALQ 137
           LYR+ D FT LYAVR+GHFKTYQ N  G++QITGFQM GELLGMDAIST+ H CDA+AL+
Sbjct: 59  LYRMDDPFTNLYAVRIGHFKTYQVNAGGEQQITGFQMAGELLGMDAISTDRHHCDAIALE 118

Query: 138 DSEVCEIPFARLEQLFGQIPHLLRHFHRMMSHEITSEQNVIMLLGNMRAEQRFAAFLVNL 197
           DSEVCEIPF RLE+LFG +P LLRHFHRMMS EIT EQ+V++LLGNMRAEQRFAAFLVNL
Sbjct: 119 DSEVCEIPFPRLEELFGSMPILLRHFHRMMSQEITREQSVMLLLGNMRAEQRFAAFLVNL 178

Query: 198 SSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVIDLP 257
           +SRY ARGYSST FQLRM+R+D+GNYLGLTIESISRL+SKF+KQGLL V  R++E++DL 
Sbjct: 179 ASRYVARGYSSTSFQLRMSREDIGNYLGLTIESISRLLSKFKKQGLLKVSNREIELLDLV 238

Query: 258 ALKRLAAGVDACN 270
            LK +AAG + C+
Sbjct: 239 TLKAMAAGTETCS 251


>gi|134095514|ref|YP_001100589.1| aerobic, anaerobic respiration,
           osmotic balance transcriptional regulator [Herminiimonas
           arsenicoxydans]
          Length = 282

 Score =  362 bits (929), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 166/249 (66%), Positives = 203/249 (81%)

Query: 35  SSALRSCTACGMHQLCLPMGLDESDMKRLDKIIGRRKVARDDFLYRIGDRFTALYAVRVG 94
           SSALR C+ C M Q+CLP GL++ DM+RLD+II R+K+A+D +LYRIGD+FTALYAVR+G
Sbjct: 15  SSALRHCSGCSMRQICLPAGLNQHDMRRLDQIIVRKKIAKDSYLYRIGDKFTALYAVRIG 74

Query: 95  HFKTYQENLDGDRQITGFQMPGELLGMDAISTEHHQCDAVALQDSEVCEIPFARLEQLFG 154
           HFKTYQEN  G+RQI GFQM G+LLGMDAIS   HQCDAVAL DSEVC IP++RLE LF 
Sbjct: 75  HFKTYQENFIGNRQINGFQMSGDLLGMDAISNLLHQCDAVALDDSEVCVIPYSRLEALFT 134

Query: 155 QIPHLLRHFHRMMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLR 214
           ++P L+RHFHR+MS EI  EQN+IM+LGNM AEQRFAAFL+NLS RYA RGYS  RFQLR
Sbjct: 135 ELPILMRHFHRIMSQEIIGEQNMIMILGNMYAEQRFAAFLINLSRRYATRGYSPIRFQLR 194

Query: 215 MTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVIDLPALKRLAAGVDACNAAAP 274
           MTR+D+GNYLGLT+ESISR+I+K RK  L+ + QRDVE++DL AL +LAAG+D    +  
Sbjct: 195 MTREDIGNYLGLTMESISRMIAKLRKGRLIEIVQRDVEILDLTALNKLAAGIDIIETSPI 254

Query: 275 AAATATART 283
           +    +A T
Sbjct: 255 SICIKSAAT 263


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 403,736
Number of extensions: 14894
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 204
Effective length of database: 733,452
Effective search space: 149624208
Effective search space used: 149624208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)