BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3150.p
         (153 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory p...   100   3e-23
gi|134096351|ref|YP_001101426.1| high-affinity branched-chain am...    85   1e-18
gi|134093985|ref|YP_001099060.1| putative transcriptional regula...    76   7e-16

>gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory
           protein [Herminiimonas arsenicoxydans]
          Length = 155

 Score =  100 bits (249), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 83/143 (58%)

Query: 3   LDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEKLG 62
            DR D+ +L+ LQ  GR+ N EL++++ +S   C+   +RL  EG ++   A++D   LG
Sbjct: 4   FDRYDRILLETLQSKGRVSNVELSERVNLSPPQCYRRVQRLEQEGVIRGYAALVDAAALG 63

Query: 63  LPVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNRLH 122
           L V   V + + R   +   E E+A+R+   + EC  ++G+FDY +K+   DL++ +   
Sbjct: 64  LGVTAFVNLNIAREQFKQVRELEQAIRQFPEILECYTISGDFDYLLKVVATDLKSLSSFL 123

Query: 123 ANTLLRLPGVRQLRSFFVLNEVK 145
            + L+++PGV  +RS   L E+K
Sbjct: 124 TDRLMQVPGVAGVRSMVCLEEIK 146


>gi|134096351|ref|YP_001101426.1| high-affinity branched-chain amino
           acid transport system; global regulatory protein, Leu
           responsive; site-specific blocking of 549 methylation
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score = 85.1 bits (209), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 74/143 (51%)

Query: 3   LDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEKLG 62
           LD +D+RIL ALQ D    N +LA  +  S   C    KRL+D G ++   AI+ P+K+G
Sbjct: 8   LDELDRRILNALQGDSSQTNNDLALAVHASPPTCLRRVKRLVDAGVIERQVAIVSPQKIG 67

Query: 63  LPVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNRLH 122
             +   V + LD    E   EFE  V   +AV +C  ++   D+ + ++V D+ A+N L 
Sbjct: 68  AGLTAIVEITLDNQAAERQVEFETVVAGESAVLQCYRVSPGPDFVLVIQVADMPAYNALV 127

Query: 123 ANTLLRLPGVRQLRSFFVLNEVK 145
                    VR ++SFF ++  K
Sbjct: 128 HRLFASHANVRNVKSFFSIHRSK 150


>gi|134093985|ref|YP_001099060.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 169

 Score = 76.3 bits (186), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 77/152 (50%)

Query: 2   SLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEKL 61
           +LD++D+++L  LQKD +I    LA K+ +S   C    + + D G +    A++DP  L
Sbjct: 6   TLDKVDRKLLNLLQKDNQIPTRILADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFAL 65

Query: 62  GLPVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNRL 121
           G  +L  + V L   + E   EFE  +     V +C  ++G++DY++ + V D+ A+ + 
Sbjct: 66  GYGMLAFLEVSLANQSDEHMLEFETRMNREPEVMQCYFVSGDYDYFLVVHVVDMDAYYQF 125

Query: 122 HANTLLRLPGVRQLRSFFVLNEVKNNPELVVE 153
               +     VR  +S F +   K +  + ++
Sbjct: 126 VRRAISGSGNVRHFQSRFPMKRAKFDTRIALD 157


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 242,839
Number of extensions: 7558
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 79
Effective length of database: 756,517
Effective search space: 59764843
Effective search space used: 59764843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)