BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3147.p
         (396 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094219|ref|YP_001099294.1| multidrug resistance secretion ...   159   2e-40

>gi|134094219|ref|YP_001099294.1| multidrug resistance secretion
           protein; putative periplasmic linker protein
           [Herminiimonas arsenicoxydans]
          Length = 398

 Score =  159 bits (402), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 173/326 (53%), Gaps = 14/326 (4%)

Query: 53  AWVLYYQFRGKYLESTNDAFVQADSVTVSSKVTGYVDQVMVADNQVVKAGQPLVRIDARD 112
           A+ L++    ++ E T+DA+V  + V V+ +V G V  +   D ++V AG PLV +D  D
Sbjct: 36  AYGLWWAIYARHFEGTDDAYVAGNVVQVTPQVGGTVVAIHADDTELVHAGMPLVELDHSD 95

Query: 113 YSAQAAQAKAQIDAAAASEEAATAQLAEQQAAIDQAKAQLAAAQDDDRFATAEVERYTPL 172
                 QA+AQ+  A    E  T  L      ++   A +A    D   A A++ R   L
Sbjct: 96  AKVALNQAEAQL--AQTVREVRT--LFVNNGTLN---ANVALRVADVARARADLARRQEL 148

Query: 173 AASGAETRERLTTLRNQQAQARSTLAARRAALEAAQ-LRVRSLQAQVRQAQAQGETAKAQ 231
           + +GA ++E L   R+    A S L A R  L + Q L  R+  A     Q      +A 
Sbjct: 149 SGTGAVSKEDLEHARSALQTAESALQATREQLASNQVLTDRTSVASHPNVQRAAAQVQAA 208

Query: 232 YDAASVNLGYTEIRASVDGRIGDKQVRVGQFVSAGTRLMTVVP-TRFYVNANFKETQIGI 290
           Y A    L    + A + G +  + V+VGQ V+ GT L+++VP T  +V+ANFKE Q+  
Sbjct: 209 YLA----LARNTLPAPITGYVAKRSVQVGQRVAPGTPLLSIVPLTTLWVDANFKEVQVAR 264

Query: 291 MRIGQPATIKVDAL-PGVEFRGHVESLSPGTGAQFSLLPPQNATGNFTKIVQRVPVRVAI 349
           MRIGQP T+  D     VE+ G V  LS GTGA F+LLP QNA+GN+ K+VQR+PVR+A+
Sbjct: 265 MRIGQPVTLHSDLYGSSVEYHGKVAGLSAGTGAAFALLPTQNASGNWIKVVQRIPVRIAL 324

Query: 350 DATPEQTRAFVAGLSVTVEVNTIGAK 375
           D      R    GLS+ VEV+   A+
Sbjct: 325 DPKELTERPLRVGLSMQVEVDIAHAE 350


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.125    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 485,830
Number of extensions: 15733
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 3
Length of query: 396
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 312
Effective length of database: 723,567
Effective search space: 225752904
Effective search space used: 225752904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)