BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3146.p
         (522 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094220|ref|YP_001099295.1| major facilitator superfamily m...   207   1e-54
gi|134096340|ref|YP_001101415.1| putative multidrug resistance-l...   124   2e-29

>gi|134094220|ref|YP_001099295.1| major facilitator superfamily
           multidrug transporter; membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 517

 Score =  207 bits (527), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/476 (28%), Positives = 250/476 (52%), Gaps = 9/476 (1%)

Query: 31  TLGALMATLDISIVNSSLPTIQGEIGASGTEGTWIATAYLVAEIVIIPMSAWLERLLGLR 90
           +L   M  LD SI N S+P I G++G S  +GTW+ T++ VA  + +P++ WL +  G  
Sbjct: 25  SLAVFMNVLDSSIANVSIPAISGDLGVSPQQGTWVITSFAVANAISVPLTGWLTQRFGQV 84

Query: 91  VLLLTAASLFTLFSVLCGLSTTLPMMIIGRVGQGFTGGALIPTAMTIIATRLPRSQQPVG 150
            L +++  LF L S LCGL+ ++ ++I  RV QG   G +IP +  ++ +  P ++  + 
Sbjct: 85  RLFISSILLFVLASCLCGLAPSIEILIAARVLQGAVAGPMIPLSQALLLSSYPPAKSGMA 144

Query: 151 NAMFGATAILGPVLGPVMGGWLTENVSWHYAFFINLPVG--AALITLLLVAIPYERPKFE 208
            A +G T ++ P++GP++GGW+++N +W + F+IN+P+G  AA  T    +I  ER    
Sbjct: 145 LAFWGMTTLVAPIMGPLLGGWISDNYTWPWIFYINIPIGIFAAWATW---SIYRERESKT 201

Query: 209 QLAQADWFGIAGLALGLGGLTVVLEEGEREQWFSSPDIRWLAATSLLGFILLAIGQMRSR 268
                D  G+  L L +G L ++L++G+   WF S +I  LA+ + + FI   I ++   
Sbjct: 202 YKLPIDKVGLVLLVLWVGSLQLMLDKGKELDWFHSGEIIILASVAAVAFIYFIIWEIGEE 261

Query: 269 HPVIQLRLLRDRQF-GSVVMMAMIVGVALYGTAYVIPQFLSGIAGYNSLQSGWIVLLSGV 327
           HPV+ L L + R F G V+ +++  G+  +G+  ++P +L    GY + ++G ++   G+
Sbjct: 262 HPVVDLSLFQGRNFSGGVIAISVAYGL-FFGSLVILPLWLQTQIGYTATEAGKVMAPVGI 320

Query: 328 PMILMMPFTPLLMRRVDIRIAVGTGFLLLATSAFLETDLSPLSYGGSFVASQLMRGLGTV 387
             I++ P    L+ ++D R    T FL+ +   F+  + +      + +   +++G    
Sbjct: 321 FAIILSPIVGKLLPKIDARWVATTAFLIFSLVFFMRAEFTQDVDMMTLMIPTVIQGAAMA 380

Query: 388 LAMLFLNQAAIRSVPPAQAGDASGLYSAARNLGGSLALAAIAVIQDQRLWLHSRRLEESL 447
           +  + L    +    P +   A+GL +  R + G +  + ++ + D R  LH  +L E  
Sbjct: 381 MFFIPLTSIILSGQSPDKIPAAAGLSNFVRIMFGGIGTSVMSTMWDNRTILHHAQLAEYT 440

Query: 448 SA-NSDLVQSSIAAQAHLLGGQDVAIQLMGATIQAQALTMTYADLFWLLGVAIVCV 502
            A NS   Q+     A  +  Q  A  ++   +  QA T+   DLFW+ G+  +C+
Sbjct: 441 GAHNSAFTQAVNTLMARGMSEQ-AAWAVIDRQMTVQASTLAATDLFWMSGIMFLCL 495


>gi|134096340|ref|YP_001101415.1| putative multidrug resistance-like
           efflux transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 472

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 195/432 (45%), Gaps = 11/432 (2%)

Query: 15  QEEKADAAAWLAVAAGTLGALMATLDISIVNSSLPTIQGEIGASGTEGTWIATAYLVAEI 74
           +    +   WL +    +G + ATL  +IVN ++P +            W++T++++A  
Sbjct: 7   RTRYGERYKWLVLLTCMIGNIAATLSATIVNVAIPDLSHYFTLGQERAQWVSTSFMLAMT 66

Query: 75  VIIPMSAWLERLLGLRVLLLTAASLFTLFSVLCGLSTTLPMMIIGRVGQGFTGGALIPTA 134
           + +  + WL +  GLR     A SL  L  V+ G S   PM++  RV +G   G + P  
Sbjct: 67  LSMLTTPWLLQRFGLRRTYTGAVSLLLLGGVVGGFSVNYPMLLSMRVLEGLAAGVMQPIP 126

Query: 135 MTIIATRLPRSQQPVGNAMFGATAILGPVLGPVMGGWLTENVSWHYAFFINLPVGAALIT 194
             +I       +Q     +FG   +L P +GP +GG+L E   W   FF+ +P    +  
Sbjct: 127 AIVILRAFAAEEQGKAMGIFGFGVVLTPAIGPSVGGFLVELFGWRSIFFVVVPPCLLVFY 186

Query: 195 LLLVAIPYERPKFEQLAQADWFGIAGLALGLGGLTVVLEEGEREQWFSSPDIRWLAATSL 254
           ++   +P      E     DW G+    L +G   + L  G  E          L    +
Sbjct: 187 MIRRFLPLYSQILEHAKPLDWKGL----LLIGISIISLLNGLVELRADLQQALLLLLLGV 242

Query: 255 LGFILLAIGQMRSRH-PVIQLRLLRDRQFGSVVMMAMIVGVALYGTAYVIPQFLSGIAGY 313
             F    + Q+R+RH P++ + L   RQF    ++A I G+ L+G+ Y++P +L     Y
Sbjct: 243 GSFTAFIVYQLRTRHEPLVNMALFGYRQFAMGALVAFIYGMGLFGSTYLLPVYLQVALHY 302

Query: 314 NSLQSGWIVLLSGVPMILMMPFTPLLMRRV--DIRIAVGTGFLLLATSAFLETDLSPLSY 371
              Q+G ++L +G+ + L +P    L  R   ++ + +G G LL A+   +    S  SY
Sbjct: 303 APSQAGLVLLPAGIVLALTIPLAGRLADRYPPNVLVVIGLG-LLTASFVLMANGSSATSY 361

Query: 372 GGSFVASQLMR-GLGTVLAMLFLNQAAIRSVPPAQAGDASGLYSAARNLGGSLALAAIAV 430
                 + + R GLG VL  L L   A+R +            + AR LGG++ ++ + +
Sbjct: 362 LLLMAWAVIGRIGLGFVLPALSLG--AMRGLDIKLIAQGVSALNFARQLGGAMGVSLVGI 419

Query: 431 IQDQRLWLHSRR 442
           + + R+ +H  R
Sbjct: 420 VLEWRITVHEAR 431


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 909,670
Number of extensions: 34925
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 4
Length of query: 522
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 436
Effective length of database: 716,977
Effective search space: 312601972
Effective search space used: 312601972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)