BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3142.p (303 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094687|ref|YP_001099762.1| putative DNA-binding transcript... 78 4e-16 gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [... 70 2e-13 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 64 1e-11 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 61 6e-11 gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 60 1e-10 >gi|134094687|ref|YP_001099762.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Herminiimonas arsenicoxydans] Length = 305 Score = 78.2 bits (191), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 6/210 (2%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLSAGGEMLA 70 L F++V R GSI+ +Q+ N+A +A S++IS LE L TVL R G+ L+ G Sbjct: 11 LSLFVDVARTGSITRGAQQANLALAAASKRISDLEAHLGTVLLYRHANGVTLTDAGNACF 70 Query: 71 AHARKMALEADR---VVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGFVF 127 HA + + +R V++D + G+R G+VR+ ++ FLP ++ F + + G Sbjct: 71 QHALGIIQDVERMSGVMSDYAS--GIR-GQVRIWANTSAITQFLPDDLHAFMQAHAGVRI 127 Query: 128 QLFVGIPTMVARQVREGNADIGLTFSRLPEPEIKVVHRQPGPIALVMRNDHPLARFRHLS 187 + V +RE DIG+ P I V + + LV+ +HPLA + +S Sbjct: 128 DIEERNSGDVVAGIRENRTDIGIFADPTPAEGIAVFTYRKQKLGLVVPKNHPLAAHKQVS 187 Query: 188 LAQLKPYPMALPDPTTTLRQLFDIACSRQQ 217 L+ Y T+L + ACSR Q Sbjct: 188 LSDALDYDFVSLAEATSLTERLHAACSRLQ 217 >gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas arsenicoxydans] Length = 308 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 7/252 (2%) Query: 11 LRYFLEVVRCG-SISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMV-LSAGGEM 68 LR E RCG +++E + L + +SRQI LEE L +FER + + L+ G Sbjct: 6 LRSIRETARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLTDPGRG 65 Query: 69 LAAHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGFVFQ 128 + ++ LEA+ + Q G G + +A++ A LP V+ F+ ++P Sbjct: 66 ILTIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPEVVQAFRAEFPKVRIA 125 Query: 129 LFVGIPTMVARQVREGNADIGLTFSRLPEPEIKV---VHRQPGPIALVMRNDHPLARFRH 185 L P +A V G ADIG+ L + E V +R A+V+ H L Sbjct: 126 LQQSSPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHH--AIVVPQGHALLSHAP 183 Query: 186 LSLAQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDAISIT 245 ++L L YP+ D T R D A + + V+T+ + YV + I Sbjct: 184 VTLEALAKYPLITYDLGFTGRGHIDDAFKSADIAPDIVLTAMDSDVIQQYVSLGLGVGIV 243 Query: 246 GDVTVRYRIERG 257 + V++ G Sbjct: 244 ASMAVQHNGSHG 255 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 2/187 (1%) Query: 9 TALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLSAGGEM 68 T L FL V GSI+ ++R +++ ++ S +I +EE+L L R RG+ + G+ Sbjct: 6 TDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATPVGKA 65 Query: 69 LAAHARKMALEADRVVADL-QALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGFVF 127 L HAR + +R+ +L + +GL+ G VR+ S+ +FLP ++ F +P Sbjct: 66 LVHHARIALRQQERMRGELSEYAQGLK-GHVRIMSNTVSLTEFLPEALSNFLATHPNVNI 124 Query: 128 QLFVGIPTMVARQVREGNADIGLTFSRLPEPEIKVVHRQPGPIALVMRNDHPLARFRHLS 187 L + + + EG DIG+ + + + LV+ DHPL+ + Sbjct: 125 DLEERLSFEIVSALTEGTIDIGILSDSVDFSGFETFPFHDDRLTLVVARDHPLSVRSSIH 184 Query: 188 LAQLKPY 194 A+ Y Sbjct: 185 FAETLDY 191 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 61.2 bits (147), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/292 (20%), Positives = 122/292 (41%), Gaps = 10/292 (3%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLSAGGEMLA 70 L+ F V R S S A++ L++ A+S Q+ LE+ LFE+ + + L+ GG L Sbjct: 53 LKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGTELL 112 Query: 71 AHARKMALEADRVVADLQALKGLRSGRVRLA--SSEGFAIDFLPRVINTFQKQYPGFVFQ 128 ++R + + + KG+ G++ +A S+ + F PR++ F + + G Sbjct: 113 HYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISAGDY---FFPRLLVEFARSHQGVTLN 169 Query: 129 LFVGIPTMVARQVREGNADIGLTFSRLPEPEIKVVHR--QPGPIALVMRNDHPLARFRHL 186 L V + Q+ D+ + P ++ ++ P P +V DH L +++ Sbjct: 170 LSVHNREGLLNQLANNLTDLAIMVR--PPTDMDTINEPFAPHPYVIVAAPDHHLVSKKNI 227 Query: 187 SLAQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDAISITG 246 ++ L P + + + + + + M +++ V+ IS Sbjct: 228 PMSTLIHEPFVVREKGSDTWHSMEDGFGSRIDDLNIAMEIKSTETIKQAVIAGMGISFLS 287 Query: 247 DVTVRYRIERGELSMRPIRDCPVDGRFVEVQTLAGRTLPRSVEIFLDYLVTE 298 T+ ++ G L++ + PV + V R LP + F ++L+ E Sbjct: 288 AHTISMELQAGSLTVLDVEGFPVMLNWYVVHRKNKR-LPPVAQAFRNFLLNE 338 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLSAGGEMLA 70 LR F S EA+ RL + AI+R + LEE + +LF R RG+ ++ G LA Sbjct: 8 LRLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITEFGTQLA 67 Query: 71 AHARKMALEADRVVADLQALKGLR-SGRVRLASSEGFAIDFLPRVINTFQKQYPGFVFQL 129 HAR+M D++ L G VR+ + L +++ +QYPG +L Sbjct: 68 EHAREMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQYPGIKLEL 127 Query: 130 FVGIPTMVARQVREGNADIGLTFSRL 155 G+ ++A V + DIG+ L Sbjct: 128 --GVTNLLA-DVVDKKIDIGVRIGPL 150 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 525,609 Number of extensions: 20201 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 10 Length of query: 303 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 222 Effective length of database: 733,452 Effective search space: 162826344 Effective search space used: 162826344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)