BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3141.p
         (512 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096447|ref|YP_001101522.1| putative dipeptide transport bi...   155   3e-39

>gi|134096447|ref|YP_001101522.1| putative dipeptide transport
           binding transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 528

 Score =  155 bits (393), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/527 (27%), Positives = 240/527 (45%), Gaps = 54/527 (10%)

Query: 14  CAVLVGGALT---ALAAHANKANDTLVYASDSEVENISQYHNNLREGVILAHLIWDTLIY 70
            A+ + GAL     LA+HA  A D  +  S ++V ++  ++ N+   V  +  I+D L+ 
Sbjct: 10  SALALMGALAWSGNLASHAAFAADLKIGLS-ADVSSLDPHYLNIAPNVTFSSHIFDALVN 68

Query: 71  RDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFN----YAVSPE 126
            D    +  P LAT+W+    T     LR+ V+F +G  F+ADDV+F+ +       SP 
Sbjct: 69  VD-ANGKLVPGLATSWRAVDATTWEFKLRRDVKFHDGSPFTADDVIFSLDRPAKLTSSPG 127

Query: 127 SKAVTRQNIDWIKSVDKLGEYQVRINLKGPF-PAALEYLTGPLPIYPAAYFKKVGLEGFS 185
                 + I   K VD    Y VR+    P+ P AL+  T  +    AA  +K   + F+
Sbjct: 128 PFTAYTKQIVAKKIVD---PYTVRLMTAAPYGPLALDMSTVFIVSKKAA--EKASTDDFN 182

Query: 186 --KAPIGTGPYKVTSVTPGQGVTLVKNTNYFKDSPQGQPSIGNIKFVVIPDPETRAAQLM 243
             KA IGTGPYK  S   G  + + +N  Y+     G+     + F +I +   R A L+
Sbjct: 183 NGKALIGTGPYKFLSFKRGDRIEVTRNDQYWG----GKSDWDKVTFRIITNSAPRLAALL 238

Query: 244 TGAIDWIWRVPPDQADSLKTNPKLTVQSGETMRVGFITLD-----------VTGSSAPNS 292
           +G +D I  VP      LK+N K +     + R  F  LD            +G   PN+
Sbjct: 239 SGDVDAIEGVPTADLSRLKSNAKFSFAQKISWRTIFWELDQSPGASRYVTDKSGKPLPNN 298

Query: 293 PFKDVRVRQAVNYAINRKGYADNLMRGGSQPVYTACFRTQFGCDSNAAIKYD-YNPAKAK 351
           P  DVRVRQA++ AINR+   +  M G + P         FG   N A+K + Y+P  AK
Sbjct: 299 PLHDVRVRQAMSKAINRQALVERTMEGLAVPASNIVSPGIFGY--NDALKVEVYDPEGAK 356

Query: 352 ELLAAAGYPNGFDTDIYAYRER-----EIAEAIIGDLRKVGIRARLHYMKFAALQTEYRS 406
           +LLA AGYP+GF   I+   +R     ++ + +     ++GI+ ++  +  +    + R+
Sbjct: 357 KLLAQAGYPHGFALTIHGPNDRYINDEQVVQTVAQFWNRIGIQTKVATLPLSVYFAKARA 416

Query: 407 GKTPMSFYSWGSFSMNDTSAFAGVYFKGSADDIT----------KDPQLQQYLQTADTSI 456
           G+  +S   WG+ + +    F      G+ +  T           +P + + + ++ +S+
Sbjct: 417 GEFSVSLLGWGTLAGD----FGLRTLVGTPNVETGWGSWNWGKYSNPAVDKLIASSLSSV 472

Query: 457 DPAVRKANYSKALELISKQAYIAPMFSYSTYYAYNAQLKFQGYPDEL 503
           D   R A   +A  L  K   + P+      +A    LK+    DE 
Sbjct: 473 DQGKRVAFAKEAAALALKDYAVVPLHHQYATWAMRKGLKYTARTDEF 519


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 977,112
Number of extensions: 40742
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 426
Effective length of database: 716,977
Effective search space: 305432202
Effective search space used: 305432202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)