BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3140.p
         (305 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096446|ref|YP_001101521.1| peptide ABC transporter membran...   196   1e-51
gi|134095503|ref|YP_001100578.1| oligopeptide ABC transporter me...   149   2e-37

>gi|134096446|ref|YP_001101521.1| peptide ABC transporter membrane
           protein [Herminiimonas arsenicoxydans]
          Length = 307

 Score =  196 bits (499), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/278 (37%), Positives = 168/278 (60%), Gaps = 18/278 (6%)

Query: 44  AAQVESVRT--QFGLDRPMATQYMDWLGRAVRLDFGNSFYFQGPVMEMITERLPITFKLG 101
           A Q+E  RT   FGLD+P+  QY  ++ +A+  D G SF F  P + +I ERLP T +L 
Sbjct: 24  ADQLERARTIAAFGLDKPLWQQYFIFIQQALSGDLGRSFSFGTPALALILERLPATLELA 83

Query: 102 GSALLLAILTAIPLGVLAAIYRDTWLDRIALLIAVVGQAMPSFWFGLTLILIFAVTLHWL 161
             A+L+AI+  IPLG+ A +   +W  +  + I+++G ++P+FW GL LI++FAV L WL
Sbjct: 84  IGAILIAIVLGIPLGLWAGLRPHSWSGKSIMAISILGFSLPTFWVGLMLIMVFAVQLGWL 143

Query: 162 PVAGN----------------ESWQHFILPAVALGYYAMPAMMRLTRSGMLEVLGSDYIR 205
           P  G                 +  QH +LPA  L  + +  ++RLTR+G  E L  DY++
Sbjct: 144 PSGGRGETSLLFGVPVSFLTLDGLQHLLLPAFNLALFNIALVIRLTRAGAQEALLQDYVK 203

Query: 206 TARAKGLSKSRVVFKHALRNAVIPVVALAAVELGFMLGGSVVIESVYSMQGLGQLAWDAI 265
            ARAKG+  SR++  H L+N +IP+V + A++ G ++  ++V ESV++  G+G+L  D+I
Sbjct: 204 FARAKGVRNSRIIGVHVLKNILIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSI 263

Query: 266 SRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDPRIR 303
              D PV+ A ++++   +I +  + DV  +LLDPR+R
Sbjct: 264 RVLDRPVIVAYLMLVVALFILINLIVDVAYSLLDPRVR 301


>gi|134095503|ref|YP_001100578.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 339

 Score =  149 bits (376), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 147/278 (52%), Gaps = 18/278 (6%)

Query: 44  AAQVESVRTQFGLDRPMATQYMDWLGRAVRLDFGNSFYFQGPVMEMITERLPITFKLGGS 103
           A +V  ++  +G D+P + ++   L      D G SFY    V +++  +LP++  LG  
Sbjct: 56  AERVAEIKALYGFDKPASERFWQMLKGFATFDLGKSFYHHKDVWDLVVSKLPVSITLGLW 115

Query: 104 ALLLAILTAIPLGVLAAIYRDTWLDRIALLIAVVGQAMPSFWFGLTLILIF--AVTLHWL 161
              L    ++PLG+  A+   +  D I  ++ +VG ++P F  G+ L+++F     + W 
Sbjct: 116 TFFLTYFISVPLGIAKAVREGSRFDAITSMMVLVGYSIPGFILGVFLLVMFGGGSFVQWF 175

Query: 162 PVAG--NESWQ-------------HFILPAVALGYYAMPAMMRLTRSGMLEVLGSDYIRT 206
           P+ G  ++ W+             H  LP  A    +   M  LT++  L+ +   Y+ T
Sbjct: 176 PLRGLTSDDWEQLSLLGKVLDYLWHITLPVTASVAGSFAVMTMLTKNTFLDEIRKQYVLT 235

Query: 207 ARAKGLSKSRVVFKHALRNAVIPVV-ALAAVELGFMLGGSVVIESVYSMQGLGQLAWDAI 265
           ARAKGLS++ V++KH  RNA+IP+V    A  +G    GS++IE+++S+ GLG L+++++
Sbjct: 236 ARAKGLSENAVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLGLLSYESV 295

Query: 266 SRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDPRIR 303
            R DYPVV   + +  +  + +  L D+     DPR++
Sbjct: 296 IRRDYPVVMGTLYLFTLIGLVVKLLGDLCYVWADPRLQ 333


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 507,003
Number of extensions: 19383
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 224
Effective length of database: 733,452
Effective search space: 164293248
Effective search space used: 164293248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)