BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3139.p
         (309 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096445|ref|YP_001101520.1| peptide ABC transporter [Hermin...   194   4e-51
gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter me...   103   1e-23

>gi|134096445|ref|YP_001101520.1| peptide ABC transporter
           [Herminiimonas arsenicoxydans]
          Length = 297

 Score =  194 bits (494), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/283 (44%), Positives = 180/283 (63%), Gaps = 5/283 (1%)

Query: 28  WRRQLRRLLGHRGLMLGAAVLAVIVLAAIFAPLLAPHDPFD----QDVTARLIPPVWQAQ 83
           +RR  R     +    G+ +L +IVLAAIFAP++AP +P+D      + +RL P      
Sbjct: 10  FRRFARNFFASKIAAGGSVLLLLIVLAAIFAPVIAPQNPYDLTQIDIMDSRLAPGAQNLD 69

Query: 84  GSWEHILGTDKLGRDYLSRLIFGARVSLTIGVAAALISGLIGTTLGVLAGYFGGRTDAVI 143
           GS+ ++LGTD+ GRD LS +++G R+S+ +GVA+  I+ LIG TLG+ AGYFGGRT+  I
Sbjct: 70  GSFTYLLGTDEQGRDMLSAILYGVRISIIVGVASTAIALLIGLTLGLCAGYFGGRTEGFI 129

Query: 144 SYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQLRDAEFIA 203
             +   +L+ P +LVAL + +L+G  +  +++ L  + W  +A   RSA    R  E++ 
Sbjct: 130 MRVADIQLSFPPILVALILLALMGPGIDKIVIALIAVQWAYYARTARSAALVERKKEYME 189

Query: 204 AAKAIGASTPYILLREILPNIMGALIVVATLEMAHAILLEATLSFLGLGVQPPTPSWGLM 263
           AA+ +G S   I+ R +LPN +  LIV+A L++A AI LEATLSFLGLG+    PS GL+
Sbjct: 190 AARGLGLSPLRIVFRHLLPNCLPPLIVIAALQVASAISLEATLSFLGLGLPVTEPSLGLL 249

Query: 264 VAEGKTYMFF-KPWVIVIPGVALALLVLAINLVGDGLRDVNAP 305
           +A G  YM   K W+ V PG+AL L V++INLV D LRDV  P
Sbjct: 250 IANGFDYMMSGKYWISVFPGIALLLTVVSINLVADQLRDVLNP 292


>gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 354

 Score =  103 bits (256), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 118/216 (54%), Gaps = 3/216 (1%)

Query: 87  EHILGTDKLGRDYLSRLIFGARVSLTIGVAAALISGLIGTTLGVLAGYFGGRTDAVISYL 146
           E+ LGTD  GRD ++RL++G RVS+  G+A      L+G   G + GYF G+TD      
Sbjct: 133 ENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLLTGAIQGYFAGKTDLFFQRF 192

Query: 147 ITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQLRDAEFIAAAK 206
           +    +MP + + +  AS+   S+ ++++LL L  W   +   R+   + R+ E++ AA+
Sbjct: 193 MEIWGSMPELYLLIIFASIFQPSIGLLLILLSLFGWMGLSDYVRADFLRNRNLEYVQAAR 252

Query: 207 AIGASTPYILLREILPNIMGALIVVATLEMAHAILLEATLSFLGLGVQPPTPSWGLMVAE 266
           A+G S   I+ R ILPN +  ++      M+ AIL   +L FLGLGV   T S G ++A+
Sbjct: 253 ALGLSNAQIIWRHILPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPASTASLGELLAQ 312

Query: 267 GKTYMFFKPWVIVIPGVALALLVLAINL-VGDGLRD 301
           GK  +    W I +    +  ++L +   +GD LR+
Sbjct: 313 GKNNL--DAWWIALSTFVVLTVMLLLLTNIGDALRN 346


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 376,456
Number of extensions: 12807
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 228
Effective length of database: 733,452
Effective search space: 167227056
Effective search space used: 167227056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)