BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3138.p (334 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 286 1e-78 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 232 2e-62 gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 190 9e-50 gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding pro... 114 7e-27 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 109 2e-25 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 286 bits (731), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 147/307 (47%), Positives = 202/307 (65%), Gaps = 2/307 (0%) Query: 7 VKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSA 66 ++NL++ G++ AV + F V G+++ LVGESG GKSMT+ ++MGL+ + A Sbjct: 1 MQNLQMHFTAREGVVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVA 60 Query: 67 DHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQQPGVTRG 126 IL DL +S + ++RG R++MIFQ+PM +LNP + Q+ EA+L V + Sbjct: 61 GKILLKDQDLRALSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKA 120 Query: 127 EARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALD 186 AR A L R GIA+ ++RL YPHQ SGG+RQRV IA++L+ PDLII DEPTTALD Sbjct: 121 TARAMARDALVRVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALD 180 Query: 187 VTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLFAQP 246 VTIQ QIL +++L +E GTA+I+ITHDL V++ +AD V VMYAG++VE+ V ++ QP Sbjct: 181 VTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQP 240 Query: 247 RHPYTRGLLNCIPVRGKTLPGSRLQAIPGVVPSLVGQVSGCAFRNRCALADGACESDPPM 306 +HPYT GL+ P R LPG L+ IPG+ PSL+ SGCAFR RC A CE+ PP+ Sbjct: 241 QHPYTHGLIASSPSR--NLPGLPLRQIPGMTPSLLNLPSGCAFRTRCERATAVCENTPPL 298 Query: 307 MQQGPRN 313 G R Sbjct: 299 SIDGART 305 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 232 bits (591), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 123/256 (48%), Positives = 163/256 (63%), Gaps = 6/256 (2%) Query: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63 LL+++NL+V T V + F + GE LVGESG GK++T+L+++ L + Sbjct: 3 LLEIQNLQVSFDTSK----VVNDVSFSIAAGEKFALVGESGSGKTVTALSILRL--NQDA 56 Query: 64 CSADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQQPGV 123 A ILF+G D+ SE +RGK ++MIFQEPMT+LNP +T+GNQ+ E ++ G+ Sbjct: 57 AYAGRILFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEGL 116 Query: 124 TRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTT 183 + A RA+ LL +TGI + R YPHQLSGG RQR MIAM+L C P L+IADEPTT Sbjct: 117 SARIAALRAIELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTT 176 Query: 184 ALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLF 243 ALDVTIQ QI+ ++ +LQ+E AV+ ITHDL +V ADRV VM G +VE +LF Sbjct: 177 ALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRELF 236 Query: 244 AQPRHPYTRGLLNCIP 259 PR YTR LL P Sbjct: 237 TAPRETYTRKLLASQP 252 Score = 144 bits (364), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 101/258 (39%), Positives = 147/258 (56%), Gaps = 12/258 (4%) Query: 4 LLDVKNLKVDLPTENGMLH-----AVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLL 58 LL ++++ + G AV + QVR GE L +VGESG GK+ LAL+ L Sbjct: 266 LLSAEHVRCTFDIKQGWFKTTPFVAVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRL- 324 Query: 59 PRKAQCSADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAM- 117 A+ S I FDG LN M LR RM ++FQ+P SL+P T+ + E + Sbjct: 325 -SSARVSGT-IAFDGKPLNAMQSDALRPLRA-RMQIVFQDPFASLSPRRTIEQIVGEGLA 381 Query: 118 LQQPGVTRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLII 177 L QP + R+ L G+ D + +YPH+ SGG RQR+ IA L+ PDL++ Sbjct: 382 LHQPQLGAAGIRKAVADALLEVGLP--PDIMARYPHEFSGGQRQRIAIARVLVLKPDLVL 439 Query: 178 ADEPTTALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETT 237 DEPT++LDV++Q Q+L+++ ELQ+++ A IFI+HDL V+ +A RV VM G+VVE+ Sbjct: 440 LDEPTSSLDVSVQQQVLQLLLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVESG 499 Query: 238 DVAQLFAQPRHPYTRGLL 255 + +QP YT+ LL Sbjct: 500 MTQAVLSQPTEAYTQRLL 517 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 190 bits (482), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 168/306 (54%), Gaps = 14/306 (4%) Query: 20 MLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGADLNGM 79 ++HAV + + GE++ LVGESGCGKS +GL S+ L+ G +L Sbjct: 40 VVHAVDQVTLTIHAGEVVGLVGESGCGKSTLGRMAVGL----HTLSSGSRLWKGVNLEVS 95 Query: 80 SEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQQPGVTRGEARERALYLLHRT 139 S +R Q + M MIFQ+P SLNP + + + EA + V E E LL Sbjct: 96 SAAERRQ-QQLGMQMIFQDPYASLNPRMRIQDVIGEAPVAHGMVPASEQTEYVARLLQTV 154 Query: 140 GIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALDVTIQAQILRMIRE 199 G+ A R++PHQ SGG R R+ IA +L P+L++ DE ALDV+IQAQ+L + + Sbjct: 155 GLDPA--LARRFPHQFSGGQRARIGIARALAVKPELLVCDEAVAALDVSIQAQVLNLFIK 212 Query: 200 LQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLFAQPRHPYTRGLLNCIP 259 L+ E +FI+HDLGVV ++DRV +MY G++VE++ A+LFA+P HPYT LL P Sbjct: 213 LRDELNLTYLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELFARPNHPYTVALLASAP 272 Query: 260 -VRGKTLPGSRLQAIPGVVPSLVGQVSGCAFRNRCALADGACESDPPMMQQGPRNAPHQA 318 + K + A+ G +PS + SGC F RC A C + P++++ AP Sbjct: 273 RLEVKKI---DFYAVKGEIPSPLHPPSGCHFHPRCPHAMPRCSVEQPLLKE---IAPAHF 326 Query: 319 RCCKLD 324 C L+ Sbjct: 327 SACHLN 332 >gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 114 bits (285), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 19/229 (8%) Query: 9 NLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADH 68 NL + G L ++ +DF V+ G+ L +VG SG GKS L+GLL S Sbjct: 15 NLTKRVADATGELTILQAVDFTVQAGDTLAIVGASGSGKS----TLLGLLAGLDTPSDGT 70 Query: 69 ILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLG---NQLCEAMLQQPGVTR 125 + DG D+ + E R LR +++ ++FQ S+ L N + ML Sbjct: 71 VKLDGIDIFALDEDGRAGLRKEKIGVVFQ--------SFQLLGHLNAVENVMLPLELRND 122 Query: 126 GEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTAL 185 G+ARE+A +L R G+++ RL+ YP LSGG +QRV +A + + P L+ ADEPT +L Sbjct: 123 GKAREKAEAMLARVGLSS---RLKHYPKYLSGGEQQRVALARAFVSEPPLLFADEPTGSL 179 Query: 186 DVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVV 234 D +++++ EL QE + ++ +THD + + + R + AG++V Sbjct: 180 DAATGESVIQLMFELNQERKSTLVLVTHDPSIAA-LCKRTITIAAGRLV 227 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 109 bits (272), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 124/256 (48%), Gaps = 24/256 (9%) Query: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63 LL+++NL G V I + GE L+G SGCGK+ L+ ++ + Sbjct: 3 LLEIRNLTRRF----GDNTVVDNISLSIEAGEFFTLLGPSGCGKT----TLLRMIAGFDE 54 Query: 64 CSADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCE--AMLQQP 121 A IL DG DL G+ +QR+ + +FQ +L P T+ + M P Sbjct: 55 PDAGKILLDGVDLTGVPPEQRV------VRTVFQN--YALFPHMTVAGNIAFPLEMANTP 106 Query: 122 GVTRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEP 181 + + AL + TG A +YPH+LSGG RQRV IA +L+ P L++ DEP Sbjct: 107 KSEIKQKVDEALEDVRLTGFA------ARYPHELSGGQRQRVSIARALVTRPKLLLLDEP 160 Query: 182 TTALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQ 241 +ALD ++ Q+ + LQ+E G +++THD ++ R+AVM G + + + + Sbjct: 161 LSALDAQLREQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTR 220 Query: 242 LFAQPRHPYTRGLLNC 257 +++ PR + + Sbjct: 221 IYSYPRSRFVADFIGT 236 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 591,219 Number of extensions: 23095 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 42 Length of query: 334 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 252 Effective length of database: 730,157 Effective search space: 183999564 Effective search space used: 183999564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)