BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3137.p (281 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 227 6e-61 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 186 9e-49 gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 174 5e-45 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 147 8e-37 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 137 4e-34 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 227 bits (578), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 122/271 (45%), Positives = 170/271 (62%), Gaps = 6/271 (2%) Query: 1 MTTQTLPPVPLDDIALELCALSKVYPIKRGLF---QPPGELKAVNDVSLRLYRGETLGLV 57 MT T P + L D++ LF + + AV+ V+L ++ GE +GLV Sbjct: 1 MTEHTQPLLALQDVSKRFAQPLDTAARIANLFGAKKSAEVVHAVDQVTLTIHAGEVVGLV 60 Query: 58 GESGCGKSTLAKMLLGLLAPSSGNVLINGQEVD---PTQRREHARHIQPIFQDPYSSLNP 114 GESGCGKSTL +M +GL SSG+ L G ++ +RR+ +Q IFQDPY+SLNP Sbjct: 61 GESGCGKSTLGRMAVGLHTLSSGSRLWKGVNLEVSSAAERRQQQLGMQMIFQDPYASLNP 120 Query: 115 RKTVGEIVGLPLKLHGLGNAAERSRKVKDILDLVGMPERTHLQYPNQLSGGQRQRVAIAR 174 R + +++G HG+ A+E++ V +L VG+ ++P+Q SGGQR R+ IAR Sbjct: 121 RMRIQDVIGEAPVAHGMVPASEQTEYVARLLQTVGLDPALARRFPHQFSGGQRARIGIAR 180 Query: 175 ALILRPDILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAV 234 AL ++P++L+CDE +ALDVS+QAQ+LNL + L+ E LTYLFISHDLGVV H+ DRV + Sbjct: 181 ALAVKPELLVCDEAVAALDVSIQAQVLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVLI 240 Query: 235 MNKGSIVECQSREQIFSNPQHPYTRMLLASA 265 M G IVE ++F+ P HPYT LLASA Sbjct: 241 MYLGRIVESSPTAELFARPNHPYTVALLASA 271 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 186 bits (473), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 115/248 (46%), Positives = 164/248 (66%), Gaps = 8/248 (3%) Query: 25 YPIKRGLFQPPGELKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLL-APSSGNVL 83 + IK+G F+ AV+DVS+++ GETLG+VGESG GK+TL LL L A SG + Sbjct: 276 FDIKQGWFKTT-PFVAVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIA 334 Query: 84 INGQEVDPTQR---REHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHG--LGNAAERS 138 +G+ ++ Q R +Q +FQDP++SL+PR+T+ +IVG L LH LG A R Sbjct: 335 FDGKPLNAMQSDALRPLRARMQIVFQDPFASLSPRRTIEQIVGEGLALHQPQLGAAGIR- 393 Query: 139 RKVKDILDLVGMPERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQA 198 + V D L VG+P +YP++ SGGQRQR+AIAR L+L+PD+++ DEPTS+LDVSVQ Sbjct: 394 KAVADALLEVGLPPDIMARYPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQ 453 Query: 199 QILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYT 258 Q+L LLL+L+ ++ L Y+FISHDL V+ + RV VM G +VE + + S P YT Sbjct: 454 QVLQLLLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVESGMTQAVLSQPTEAYT 513 Query: 259 RMLLASAL 266 + LLA+++ Sbjct: 514 QRLLAASV 521 Score = 184 bits (468), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 103/234 (44%), Positives = 141/234 (60%), Gaps = 8/234 (3%) Query: 39 KAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLL--APSSGNVLINGQEV----DPT 92 K VNDVS + GE LVGESG GK+ A +L L A +G +L GQ++ + Sbjct: 17 KVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAYAGRILFEGQDILQRSEAA 76 Query: 93 QRREHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERSRKVKDILDLVGMPE 152 R + + IFQ+P ++LNP T+G + L LH +A + + ++LD G+PE Sbjct: 77 MRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEGLSARIAALRAIELLDKTGIPE 136 Query: 153 --RTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLDLKAE 210 R L YP+QLSGGQRQR IA AL +P +LI DEPT+ALDV++Q QI+ LL L+ E Sbjct: 137 PQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQIVELLNQLQRE 196 Query: 211 FGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLAS 264 + L I+HDL +V H DRV VM KG +VE + ++F+ P+ YTR LLAS Sbjct: 197 ENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRELFTAPRETYTRKLLAS 250 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 174 bits (440), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 108/253 (42%), Positives = 149/253 (58%), Gaps = 16/253 (6%) Query: 36 GELKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLL-APS---SGNVLINGQEVDP 91 G +KAV DVS + G+ +GLVGESG GKS A ++GL+ AP +G +L+ Q++ Sbjct: 13 GVVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVAGKILLKDQDLRA 72 Query: 92 ----TQRREHARHIQPIFQDPYSSLNPRKTVG-EIVGLPLKLHGLGNAAERSRKVKDILD 146 RR I IFQDP +LNP + +++ L +G A R+ +D L Sbjct: 73 LSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKATARA-MARDALV 131 Query: 147 LVGM--PERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLL 204 VG+ P+ L YP+Q SGG RQRVAIA AL+ +PD++ICDEPT+ALDV++Q QIL + Sbjct: 132 RVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALDVTIQGQILYEM 191 Query: 205 LDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLAS 264 L E G ++I+HDL V+ L D V VM G IVE S +++ PQHPYT L+AS Sbjct: 192 QKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQPQHPYTHGLIAS 251 Query: 265 ALTPEPGLGIPAL 277 + P +P L Sbjct: 252 S----PSRNLPGL 260 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 147 bits (370), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 141/239 (58%), Gaps = 12/239 (5%) Query: 29 RGLFQPPGELKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLAPSSGNVLINGQE 88 R L + G+ V+++SL + GE L+G SGCGK+TL +M+ G P +G +L++G Sbjct: 7 RNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDG-- 64 Query: 89 VDPTQRREHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERSRKVKDILD-- 146 VD T R ++ +FQ+ +L P TV + PL++ + E +KV + L+ Sbjct: 65 VDLTGVPPEQRVVRTVFQN--YALFPHMTVAGNIAFPLEMANTPKS-EIKQKVDEALEDV 121 Query: 147 -LVGMPERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLL 205 L G R YP++LSGGQRQRV+IARAL+ RP +L+ DEP SALD ++ Q+ L+ Sbjct: 122 RLTGFAAR----YPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 206 DLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLAS 264 +L+ E G+T+++++HD L R+AVMNKG+I + +I+S P+ + + + Sbjct: 178 NLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGT 236 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 137 bits (346), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 8/232 (3%) Query: 36 GELKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLAPSSGNVLINGQEVDPTQRR 95 G A+NDVSL GE L+G SGCGK+TL +++ GL P G VL++G++ R Sbjct: 13 GNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVR 72 Query: 96 EHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERS---RKVKDILDLVGMPE 152 E R + +FQ + +L TV E + L++ S KV +L+LV + Sbjct: 73 E--RQVGFVFQ--HYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLELVQLDW 128 Query: 153 RTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLDLKAEFG 212 +YP QLSGGQRQR+A+ARAL + P +L+ DEP ALD V+ ++ L L E Sbjct: 129 LAD-RYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELH 187 Query: 213 LTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLAS 264 +T +F++HD + D++ +MNKG + + + + +++NP P+ L + Sbjct: 188 VTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGN 239 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 537,858 Number of extensions: 22026 Number of successful extensions: 221 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 48 Length of query: 281 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 200 Effective length of database: 733,452 Effective search space: 146690400 Effective search space used: 146690400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)