BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3135.p
         (399 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093503|ref|YP_001098578.1| putative peptidase M20D, amidoh...   366   e-103

>gi|134093503|ref|YP_001098578.1| putative peptidase M20D,
           amidohydrolase [Herminiimonas arsenicoxydans]
          Length = 397

 Score =  366 bits (940), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/391 (45%), Positives = 252/391 (64%), Gaps = 12/391 (3%)

Query: 17  DLKEEITGLRRHIHQHPELSFEEVDTAALVAARLEEWGYAVTRHIGGNGLVATLRVGSST 76
           +   E+  +RR IH +PEL FEE +TA  VA +L EWG  V R +G  G+V  +R G+S 
Sbjct: 9   EFHHELQAIRRAIHANPELCFEERETAEFVAGKLTEWGIPVLRGMGVTGVVGIIRNGNSD 68

Query: 77  RSIGLRADMDALPIQEETGLDWASIKPGAMHACGHDGHTAMLLGAAKHLARTRRFDGTLN 136
           R+IGLRADMDALPIQE       S   G MHACGHDGHTAMLLGAA +L++ + FDGT+ 
Sbjct: 69  RAIGLRADMDALPIQEINTFPHTSRNAGKMHACGHDGHTAMLLGAAHYLSQHKNFDGTVY 128

Query: 137 LIFQPAEEAGFDSGAQKMLADGLFERFPCDAVFGIHNHPGVEEGTFMFRSGPFMAACDTV 196
           LIFQPAEE G   GA++M+ DGLF + P  AVFG+HN PG+  G F   +GP MA+ +  
Sbjct: 129 LIFQPAEEGG--GGAKRMMDDGLFTQCPMQAVFGMHNWPGIPVGEFGVTAGPMMASSNEF 186

Query: 197 KIRITGRGSHAARPHLSVDPVVAAASVVMALQTVVARNVDPMETAVVTVGSLHAGRASNV 256
           ++ ++G+G+HAA+PH  +DP++ A  +  + QT++ RN  P++ A +++  +HAG  +NV
Sbjct: 187 EVIVSGKGAHAAQPHKGIDPIMVAVQIAQSWQTIITRNKSPIDAAALSITQIHAGSTTNV 246

Query: 257 IPEFATLELSVRSFKPEVRELLEQRIRALVSSHAESYGAQAQIEYLRGYPVLVNSQAETD 316
           IP+ A L  +VR+F  +V +L+E R+RA+    A+++ A  +  + R YP L+N   ET 
Sbjct: 247 IPDNARLIGTVRTFDLKVLDLIENRMRAIAEHTAQAFDATVEFHFKRNYPPLINHAKETA 306

Query: 317 FARSVAEELVGPDKVIAPFGPIAGSEDFAYFLQQRPGCFLRVGNGRGQ----------PM 366
           FA  + + +VG + V A   P  G+EDFA+ LQ +PGC++ +GNG G             
Sbjct: 307 FAVDILQGIVGAEHVNAQVEPTMGAEDFAFMLQDKPGCYVFIGNGEGDHRVAGHGLGPCN 366

Query: 367 LHNAGYDFNDANIPVGAAYWTRLVERWMPAK 397
           LHN  YDFND  +P+GA YW RL E ++  +
Sbjct: 367 LHNPSYDFNDDLLPIGATYWVRLAEAFLKQR 397


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 792,074
Number of extensions: 33736
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 315
Effective length of database: 723,567
Effective search space: 227923605
Effective search space used: 227923605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)