BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3131.p (244 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding pro... 127 7e-31 gi|134095406|ref|YP_001100481.1| lipoprotein releasing system AT... 116 1e-27 gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-b... 109 1e-25 gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding pro... 109 1e-25 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 103 7e-24 >gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 266 Score = 127 bits (318), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 9/205 (4%) Query: 40 GEHIFISGPSGSGKSTLLATIGGIILPQAGQVEVLGQPLQTLSAARRDRFRVDHIGYIFQ 99 GE +FI GPSGSGK+TLL+ I GI+ P G V V GQ L LS FR++ IG++FQ Sbjct: 70 GEMLFIVGPSGSGKTTLLSIISGILKPNEGSVIVKGQDLWQLSKDDLADFRLNTIGFVFQ 129 Query: 100 QFNLLPYLSILDNVLLPCQFSPYRKDRARQQGDDLKQVAQSLLAALDLAPALWRRPVTQL 159 ++L P L+ +NV +P + + GD + + A+ L + L + PV +L Sbjct: 130 DYHLFPRLTTAENVAIPLIL------KKNKWGDAITE-AKKYLDIVGLKERVDIVPV-KL 181 Query: 160 SIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFLDLLQRECAQSGAALVFVSHDQ 219 S G+QQRVA AR+++ P I++ DEPT++LD D + L + + ++ V+HD Sbjct: 182 SGGEQQRVAIARAMVSHPSILILDEPTASLDGDTGRKILAFVHDQILNEKTCILIVTHDT 241 Query: 220 RLAERFTRRIALEQINQAARTEEAA 244 R+ E F RI + + ++AA Sbjct: 242 RIFE-FADRIMYMEDGKITGFDKAA 265 >gi|134095406|ref|YP_001100481.1| lipoprotein releasing system ATP-binding protein lolD [Herminiimonas arsenicoxydans] Length = 228 Score = 116 bits (291), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 109/213 (51%), Gaps = 8/213 (3%) Query: 19 SFTWPGQSQPALLLERLSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQVEVLGQPL 78 +FT + L L + GE + I G SGSGKSTLL +GG+ P AG V +L Q Sbjct: 14 TFTQGKYAVDVLKGINLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGSVTLLHQDF 73 Query: 79 QTLSAARRDRFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFSPYRKDRARQQGDDLKQVA 138 +L R R +G+++Q +LLP S LDNV +P +++A + A Sbjct: 74 ASLDEKTRGNLRNRSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPREQAH-------ETA 126 Query: 139 QSLLAALDLAPALWRRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFL 198 +++LA + L + P +LS G++QRVA AR+L+ +P ++ADEPT LD Sbjct: 127 RAILARVGLEHRVTHVP-GELSGGERQRVALARALVTQPACVLADEPTGNLDRHTAHKTF 185 Query: 199 DLLQRECAQSGAALVFVSHDQRLAERFTRRIAL 231 DL+ G A V V+HD LA R + L Sbjct: 186 DLMLELSRTLGTAFVIVTHDIELATHCDRILRL 218 >gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-binding/membrane protein [Herminiimonas arsenicoxydans] Length = 655 Score = 109 bits (272), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 15/224 (6%) Query: 13 IDMRELSFTWPGQSQPALLLE--RLSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQ 70 I++R ++ T+ +L L + GE + I G SGSGKSTL+ +G + P G Sbjct: 17 IELRGVTKTYRNGGLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTGS 76 Query: 71 VEVLGQPLQTLSAARRDRFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFS--PYRKDRAR 128 +G+ + R R D G++FQ +NL+ S +NV +P +S P + AR Sbjct: 77 YYFMGRDVSDFGRDERALLRRDDFGFVFQSYNLIASASAAENVEVPAMYSGLPPAERHAR 136 Query: 129 QQGDDLKQVAQSLLAALDLAPALWRRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSA 188 AQ+LL L LA RP QLS GQQQRV+ +R+L+ II+ADEPT A Sbjct: 137 ---------AQALLTELGLADRSHHRP-NQLSGGQQQRVSISRALMNGGRIILADEPTGA 186 Query: 189 LDSDRQQAFLDLLQRECAQSGAALVFVSHDQRLAERFTRRIALE 232 LDS Q + LL A+ G ++ ++H + +A+ R I ++ Sbjct: 187 LDSKSGQDVMKLLADLSAR-GHTVLLITHAKEVADHAQRLIEIK 229 >gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 109 bits (272), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 12/198 (6%) Query: 35 LSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQVEVLGQPLQTLSAARRDRFRVDHI 94 +V G+ + I G SGSGKSTLL + G+ P G V++ G + L R R + I Sbjct: 35 FTVQAGDTLAIVGASGSGKSTLLGLLAGLDTPSDGTVKLDGIDIFALDEDGRAGLRKEKI 94 Query: 95 GYIFQQFNLLPYLSILDNVLLPCQFSPYRKD-RARQQGDDLKQVAQSLLAALDLAPALWR 153 G +FQ F LL +L+ ++NV+LP + R D +AR++ A+++LA + L+ L Sbjct: 95 GVVFQSFQLLGHLNAVENVMLPLEL---RNDGKAREK-------AEAMLARVGLSSRLKH 144 Query: 154 RPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFLDLLQRECAQSGAALV 213 P LS G+QQRVA AR+ + P ++ ADEPT +LD+ ++ + L+ + + LV Sbjct: 145 YP-KYLSGGEQQRVALARAFVSEPPLLFADEPTGSLDAATGESVIQLMFELNQERKSTLV 203 Query: 214 FVSHDQRLAERFTRRIAL 231 V+HD +A R I + Sbjct: 204 LVTHDPSIAALCKRTITI 221 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 103 bits (257), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 114/223 (51%), Gaps = 24/223 (10%) Query: 13 IDMRELSFTWPGQSQPALLLERLSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQVE 72 I+M+ +S W G Q L SVA G+ + + GPSGSGKSTL+ T+ G+ Q G + Sbjct: 2 IEMKNVS-KWYGSFQ-VLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSIT 59 Query: 73 V----LGQPLQTLSAARRDRFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFSPYRKDRAR 128 V +G P L A R IG +FQ F L P+LSI +N+ L + R Sbjct: 60 VDGISVGDPKTNLPALR------SRIGMVFQNFELFPHLSIRENLTL---------GQIR 104 Query: 129 QQGDDLKQVAQSLLAALDLAPALWRRPV--TQLSIGQQQRVAAARSLIGRPEIIVADEPT 186 G ++ A+ L LD + ++ QLS GQQQRVA AR+L P ++ DEPT Sbjct: 105 VLGRSEEEAAERGLKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPT 164 Query: 187 SALDSDRQQAFLDLLQRECAQSGAALVFVSHDQRLAERFTRRI 229 SALD + LD++ AQ G ++ V+H+ A + R+ Sbjct: 165 SALDPEMINEVLDVMV-GLAQDGMTMMVVTHEMGFARKVANRV 206 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 408,072 Number of extensions: 15230 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 42 Length of query: 244 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 165 Effective length of database: 740,042 Effective search space: 122106930 Effective search space used: 122106930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)