BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3129.p (278 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 93 2e-20 gi|134096229|ref|YP_001101304.1| ABC transporter ATP-binding pro... 89 2e-19 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 74 1e-14 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 73 1e-14 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 71 5e-14 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 11/213 (5%) Query: 4 AISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRV-- 61 +I + N+ + AL+ VS F G LTA++GP+G GK+TLL+ + GL + + G+V Sbjct: 2 SIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 62 ------QTHVDSRRIAYLPQQAEIDRSFPINVLDCVLLGYWQAKGNWGGIDAAMRQRAVQ 115 HV R++ ++ Q + + + V + + G ++ ++++ + Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKH--MTVFENIAFGLRVRPAATRPSESVIKEKVTK 119 Query: 116 ALAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLRII 175 L V LD A R LS GQ QR+ AR L + V+LLDEPF A+DA+ +L R + Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 176 SAWHAERR-TVIAVLHDHDQVRRAFPQTLLLAR 207 H E T I V HD ++ Q +L+ + Sbjct: 180 RRLHDELHVTSIFVTHDQEEALEVADQIVLMNK 212 >gi|134096229|ref|YP_001101304.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 303 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 95/197 (48%), Gaps = 17/197 (8%) Query: 3 AAISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRVQ 62 AAI ++ + SYR AL+ VS A E G ++GPNGAGK+TL+ + GL R + G ++ Sbjct: 2 AAIQINQVEKSYRALKALNGVSLAIEEGEFFGLLGPNGAGKTTLISILAGLNRADAGSIK 61 Query: 63 TH-----VDSRR----IAYLPQQAEIDRSFPINVLDCVLLGYWQAKGNWGGIDAAMRQRA 113 H D R+ + +PQ+ D F + + GY+ K N ID M Sbjct: 62 VHGYDVVTDYRQTRKLLGVVPQELVFDPFFTVRETLRMQSGYYGLKNNDAWIDEVMHH-- 119 Query: 114 VQALAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLR 173 + L G A + +LS G +RVL A+ L+ VI+LDEP +D L + Sbjct: 120 ------LDLTGKADANMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWK 173 Query: 174 IISAWHAERRTVIAVLH 190 IS + E TV+ H Sbjct: 174 FISRLNREGHTVVLTTH 190 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 73.6 bits (179), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 20/207 (9%) Query: 5 ISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRVQT- 63 +++ N++ + AL V+ +G + ++GPNGAGK+T + GL + + G + Sbjct: 11 LNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFELA 70 Query: 64 -HVDSRRIAYLPQQAEIDRSF-------PINVLDCVLLG--YWQAKGNWGGI-------- 105 S +L +A I R+F + L+ V++G +G +G + Sbjct: 71 GKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAARQ 130 Query: 106 -DAAMRQRAVQALAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAID 164 +AA+R RA++ L VG+ FA R LS G +R+ AR L D +++ LDEP ++ Sbjct: 131 EEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 190 Query: 165 ARTTGDLLRIISAWHAERRTVIAVLHD 191 A L ++ AE +T++ + HD Sbjct: 191 ATEKLGLRELLVKIKAEGKTILLIEHD 217 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 13/198 (6%) Query: 3 AAISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRVQ 62 A + + NLT + + + ++S + E G ++GP+G GK+TLL+ + G + G++ Sbjct: 2 ALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKIL 61 Query: 63 THVDSRRIAYLPQQAEIDRSFPINVLDCVLLGYWQAKGNWG-------GIDAAMRQRAVQ 115 +D + +P + + R+ N L + GN + ++Q+ + Sbjct: 62 --LDGVDLTGVPPEQRVVRTVFQN---YALFPHMTVAGNIAFPLEMANTPKSEIKQKVDE 116 Query: 116 ALAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDL-LRI 174 AL V L GFA R LS GQ QRV AR L+ +++LLDEP +A+DA+ + + + Sbjct: 117 ALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIEL 176 Query: 175 ISAWHAERRTVIAVLHDH 192 I+ T + V HD Sbjct: 177 INLQKEVGITFVYVTHDQ 194 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 71.2 bits (173), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 25/244 (10%) Query: 1 MNAAISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGR 60 M++ + + L SY + V+ E G + ++GPNGAGK+T ++GLV + GR Sbjct: 1 MSSKLIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGR 60 Query: 61 VQTH-VDSRR----------IAYLPQQAEIDRSFPINVLDCVLLGYWQAKGNWGGIDAAM 109 ++ VD R ++YLPQ+A + R + +L + G + Sbjct: 61 IELDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALS-KEQI 119 Query: 110 RQRAVQALAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTG 169 QR LA + ++ SLS G+ +RV AR L + +LLDEPF +D Sbjct: 120 EQRLDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVI 179 Query: 170 DLLRIISAWHAERRTVIAVLHDHDQVR-------RAFPQTLLLARNVVAWGETAEVMCEE 222 ++ RI+ + R + ++ DH+ VR RA+ ++ V+A G +++ +E Sbjct: 180 EIQRIVRFL--KERGIGVLITDHN-VRETLGICDRAY---IINQGAVLASGRPDDIIADE 233 Query: 223 NLQR 226 +++R Sbjct: 234 SVRR 237 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 469,640 Number of extensions: 18690 Number of successful extensions: 199 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 36 Length of query: 278 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 198 Effective length of database: 736,747 Effective search space: 145875906 Effective search space used: 145875906 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)