BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3125.p (312 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093563|ref|YP_001098638.1| LysR family transcriptional reg... 94 8e-21 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 74 7e-15 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 63 2e-11 >gi|134093563|ref|YP_001098638.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 299 Score = 94.0 bits (232), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 128/293 (43%), Gaps = 5/293 (1%) Query: 1 MPSPLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGV 60 M S LPP+ AL FEAA R S +AA EL IT SA S +I+ LE++ + LFLR R V Sbjct: 1 MASRLPPVHALSAFEAAARHGSFAVAAEELCITPSAFSHRIRLLEDFVGERLFLRDGRSV 60 Query: 61 EPTEAALAFYAEVKASLDRIALAAEHLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 TE + V+ +L +A A V++ P+ A +P L +F + Sbjct: 61 SLTEFGRRYLDVVRGALSSLADFPLPHRYASTQLKVKVTVPPTFARYLFLPHLHEFMALH 120 Query: 121 PRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLE-THP 179 P I + ++ Y + + D+ + + + + P+ASP +LE Sbjct: 121 PEISIETYLSVPLYDMSLSET-DIEVRFGAGKYPDIVTEKLFREPVFPVASPAYLEQIGK 179 Query: 180 IRVPRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGM 239 + VP D + L L S W W AG+ + G + L L+A GV + Sbjct: 180 LNVPADLQKAQL--LRSALEPWQPWFEMAGLDWQEPSTGLRIDDLGLLLEAVKHGYGVAL 237 Query: 240 GTLALVDDDLAAGRLVRLFP-EIVLHGEGYHMLYRSNADSNPALKTFITWLKQ 291 D +A+G +V LF ++ Y+++Y + P + + W+ + Sbjct: 238 TRQHFAADMIASGEIVSLFDLQLTTPQHAYYLVYDRHVRERPEVALMLDWMME 290 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 74.3 bits (181), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 17/289 (5%) Query: 11 LKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGVEPTEAALAFY 70 +K F A V S T A L I+ + VS+ + LE++ L R +R + TE+ LA+Y Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 71 A---EVKASLDRIALAAEHLAL--AGKSRVVRLIAAP-SVAMRWLIPRLSQFQIDNPRIE 124 ++ A +D AE +A A R +A P S + P L+++ P E Sbjct: 61 ERCLQILADVDE----AEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYP--E 114 Query: 125 VRVTTTMSEYFED-VKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETHPI-RV 182 VR+ +++ D ++D +D+ I L SG + D V ASP +L+ H + Sbjct: 115 VRLDIALADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQT 174 Query: 183 PRDFVEVPLIHLSSRSAA--WSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMG 240 P D + ++ S S+ W GK AVR P L L AA G+ Sbjct: 175 PEDLKQHACLNYSYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRL-AALDGAGLIWQ 233 Query: 241 TLALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSNADSNPALKTFITWL 289 +V DD+ AGRLV L + G + +Y S + ++TF+ +L Sbjct: 234 PHFIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYL 282 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 15/290 (5%) Query: 11 LKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGVEPTEAALAFY 70 LK F A + + +L AA L T SAVS+ + LEE L R +R +E T+ F Sbjct: 8 LKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLFL 67 Query: 71 AEVKASLDRIALAAEHLALAGK--SRVVRLIAAPSVAMRWLIPRLSQFQIDNPRIEVRVT 128 + +A L + A E + + + S +R+ AA + ++P +++F+ P+I + +T Sbjct: 68 KKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLELT 127 Query: 129 TTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETHPI-RVPRDFV 187 + + + ++ D+ I L+ S + LASP +L+ H + P Sbjct: 128 SN-DQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQLA 186 Query: 188 EVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMGTLA--LV 245 L+ + + + AG P ++ S +L+A A G G+ +LA + Sbjct: 187 GHQLLGFLQFESGNTWPIRHAGGEGLTVTPA-LFASSGETLRALAL-HGQGIASLADYMT 244 Query: 246 DDDLAAGRLVRLFPEIVLHGEGY----HMLYRSNADSNPALKTFITWLKQ 291 DD+AAGRLVR+ + GY H +Y N + + F+ +L+Q Sbjct: 245 RDDIAAGRLVRILEN---YYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQ 291 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 606,576 Number of extensions: 24122 Number of successful extensions: 89 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 3 Length of query: 312 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 230 Effective length of database: 730,157 Effective search space: 167936110 Effective search space used: 167936110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)