BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3124.p (673 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 385 e-108 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 372 e-104 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 364 e-102 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 362 e-101 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 362 e-101 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 385 bits (989), Expect = e-108, Method: Compositional matrix adjust. Identities = 235/406 (57%), Positives = 284/406 (69%), Gaps = 34/406 (8%) Query: 269 LSVVLALVAIAAAAVLLSYTITRLLRR-LGVVRDAMEDIASGDGDLTRRLDTNGKDELAQ 327 L +VL LVA+ ++L++ +TR + + L +ASGD LT R+ + KDE Q Sbjct: 189 LLIVLGLVALTLG-IVLAWMLTRSITKPLDYAVSVARLVASGD--LTGRITVDSKDETGQ 245 Query: 328 ISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAGSLEETASAMEE 387 + +A D ++ ++ +R +++ +S++IASGN+DLS+RTE+QA SLEETAS+MEE Sbjct: 246 LLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEE 305 Query: 388 LTSTVKQNADNARQANQLAVSASDVAVHGGTVVGQVVSTMSSINESSRKIVDIISVIDGI 447 LTSTVKQNADNARQANQLAV+AS VA GGTVV +VV TM IN S+RKIVDII VIDGI Sbjct: 306 LTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGI 365 Query: 448 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKQLIDDSVQKVETG 507 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDDSV KV+TG Sbjct: 366 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTG 425 Query: 508 SQLVAQAGSTMDEVVSSVKRVTDIVGEISSASQEQSAGISEVGNAVTLMDEATQQNAALV 567 S+LVA+AG+TM EVV SVKRVTDI+ EI +ASQEQSAGI +V A+ MD+ TQQNAALV Sbjct: 426 SKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALV 485 Query: 568 EQAAAAAKSLQEQAAHLAEVVAGFKLDESAHAAPRAASAPPPSPAASPAPAARSAPINVT 627 E+AAAAA+SL EQAA+LA+ V+ FKLD A+++ A P AAS APA R Sbjct: 486 EEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVATRLP---VAASNAPATR----QFA 538 Query: 628 PKPVPLKAKTPNRPALPAEPAAAKSEPKPTTKAAPKSSGGDDWEEF 673 P P K RP GDDWEEF Sbjct: 539 ASPAPKKIANETRPV-----------------------SGDDWEEF 561 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 372 bits (954), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/433 (55%), Positives = 299/433 (69%), Gaps = 35/433 (8%) Query: 251 LVALDYREATQAIGVLMTLSVVLALVAIAAA------AVLLSYTITRLLRRLGVVRDAME 304 L+ L+ REA +A T V++ ++I A A +++ + RL+ R + DA++ Sbjct: 165 LIDLELREAKKAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIAR--PLHDAVQ 222 Query: 305 DIAS-GDGDLTRRLDTNGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASG 363 S GDLT+++ N +E Q+ +A D +S+T+ +RR +E++ V+S EIASG Sbjct: 223 IARSVAAGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASG 282 Query: 364 NMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGTVVGQV 423 N DLS+RTE QAGSLEETAS+MEELTSTV+QNADNARQANQL VSA++VAV GG+VV +V Sbjct: 283 NADLSSRTEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEV 342 Query: 424 VSTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 483 V TM SI +SSRKIVDII VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA Sbjct: 343 VITMGSIKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLA 402 Query: 484 QRSATAAKEIKQLIDDSVQKVETGSQLVAQAGSTMDEVVSSVKRVTDIVGEISSASQEQS 543 QRSA AAKEIK LIDDSV KV+ GS+LV QAGSTM E+V+SVK V DI+ EI+SASQEQS Sbjct: 403 QRSAGAAKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQS 462 Query: 544 AGISEVGNAVTLMDEATQQNAALVEQAAAAAKSLQEQAAHLAEVVAGFKLDESAHAAPRA 603 GI +V A++ MDE TQQNAALVEQAAAAA+S+Q+QA L+ VA FKLD A + Sbjct: 463 DGIEQVNQAISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKLDAGGSAMSTS 522 Query: 604 AS---APPPSPAASPAPAARSAPINVTPKPVPLKAKTPNRPALPAEPAAAKSEPKPTTKA 660 AS A P AA+PA +R+ +T P P +P + Sbjct: 523 ASTRRAAPALQAANPATTSRA----LTAAPHKQLETKPQKPI-----------------S 561 Query: 661 APKSSGGDDWEEF 673 A KS GDDWEEF Sbjct: 562 ADKS--GDDWEEF 572 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 364 bits (935), Expect = e-102, Method: Compositional matrix adjust. Identities = 228/410 (55%), Positives = 283/410 (69%), Gaps = 25/410 (6%) Query: 269 LSVVLALVAIAAAAVLLSYTITRLLRRLGVVRDAMEDI----ASGDGDLTRRLDT-NGKD 323 LS +AL+ A A+LL I L +G+ R E + + +GDLT R D +D Sbjct: 186 LSGRMALIIGAVIAILLGTLIAWRLT-VGITRPLHEALKVAESVAEGDLTARSDMAETQD 244 Query: 324 ELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAGSLEETAS 383 E + A + RT+ IR ++++ +SSEIASGN+DLS+RTEQQA SLEETAS Sbjct: 245 EPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETAS 304 Query: 384 AMEELTSTVKQNADNARQANQLAVSASDVAVHGGTVVGQVVSTMSSINESSRKIVDIISV 443 +MEELTSTVKQNADN+RQANQLAV+AS VAV GG VV QVV TM +IN S++KIVDII V Sbjct: 305 SMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGV 364 Query: 444 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKQLIDDSVQK 503 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAKEIK LI DSV+K Sbjct: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEK 424 Query: 504 VETGSQLVAQAGSTMDEVVSSVKRVTDIVGEISSASQEQSAGISEVGNAVTLMDEATQQN 563 V+ GS+LVA+AG+TMDE+V VKRV DI+ EI++ASQEQS GI +V AV+ MD+ TQQN Sbjct: 425 VDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQN 484 Query: 564 AALVEQAAAAAKSLQEQAAHLAEVVAGFKLDESAHAAPRAASAPPPSPAASPAPAARSAP 623 AALVE+AAAAA+SLQ+QA +LAE V+ F++ S +A ++A+ A P A AP Sbjct: 485 AALVEEAAAAAESLQDQARNLAEAVSVFRVG-SGYATAQSAAPRTVQSTAMHKPLA--AP 541 Query: 624 INVTPKPVPLKAKTPNRPALPAEPAAAKSEPKPTTKAAPKSSGGDDWEEF 673 + + L + A P P ++GGDDWEEF Sbjct: 542 VKKSSSSSSLTVTESKKVAAP----------------KPVAAGGDDWEEF 575 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/410 (54%), Positives = 276/410 (67%), Gaps = 47/410 (11%) Query: 265 VLMTLSVVLALVAIAAAAVLLSYTITRLLRRLGVVRDAMEDIASGDGDLTRRLDTNGKDE 324 ++ + V+L L+ +A A L IT L+ + + D IASGD LT ++ ++E Sbjct: 191 IIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDT---IASGD--LTSNIEVKSRNE 245 Query: 325 LAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAGSLEETASA 384 + + +++ T+ +R S ++ +++EIA+GN+DLS+RTEQQA SLEETAS+ Sbjct: 246 MGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASS 305 Query: 385 MEELTSTVKQNADNARQANQLAVSASDVAVHGGTVVGQVVSTMSSINESSRKIVDIISVI 444 MEELTSTVKQN DNARQANQLA SAS VAV GG VV VV+TM +IN S+RKIVDII VI Sbjct: 306 MEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVI 365 Query: 445 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKQLIDDSVQKV 504 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDDSV KV Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKV 425 Query: 505 ETGSQLVAQAGSTMDEVVSSVKRVTDIVGEISSASQEQSAGISEVGNAVTLMDEATQQNA 564 + G++LVA+AG+TM EVV SVKRVTDI+ EI +ASQEQSAGI +V A+ MDE TQQNA Sbjct: 426 DAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNA 485 Query: 565 ALVEQAAAAAKSLQEQAAHLAEVVAGFKLDESAHAAPRAASAPPPSPAASPAPAARSAPI 624 ALVEQAAAAA SL++QA +L+ VV+ FKL H +SAP Sbjct: 486 ALVEQAAAAASSLRDQATNLSTVVSVFKL--QGH---------------------QSAPQ 522 Query: 625 NVTPKPVPLKAKTPNRPALPAEPAAAKSEPKPTTKAAPKSSGGD-DWEEF 673 N+ P+ P AL + PAA A G D DWE+F Sbjct: 523 NLVPQARP--------KALESRPAA----------IAHTGKGNDGDWEQF 554 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust. Identities = 217/363 (59%), Positives = 258/363 (71%), Gaps = 30/363 (8%) Query: 311 GDLTRRLDTNGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSAR 370 GDL R++ N DE Q+ +A D + +++ ++R E++ +S++IA+GN+DLS+R Sbjct: 233 GDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSR 292 Query: 371 TEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGTVVGQVVSTMSSI 430 TE+QA SLEETAS+MEELTSTVKQNADNARQANQLAVSAS VA GG VV QVV TM I Sbjct: 293 TEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDI 352 Query: 431 NESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAA 490 N S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA Sbjct: 353 NSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAA 412 Query: 491 KEIKQLIDDSVQKVETGSQLVAQAGSTMDEVVSSVKRVTDIVGEISSASQEQSAGISEVG 550 KEIK LI DSV KV+ GS+LVA+AG TM+EVV+SVKRVTDI+ EI +ASQEQSAGI +V Sbjct: 413 KEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVN 472 Query: 551 NAVTLMDEATQQNAALVEQAAAAAKSLQEQAAHLAEVVAGFKLDESAHAAPRAASAPPPS 610 A+ MD+ TQQNAALVE+AAAAA+SL EQA LAE V+ FKLD A + P + + Sbjct: 473 QAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAASTPATKTVRKIA 532 Query: 611 PAASPAPAARSAPINVTPKPVPLKAKTPNRPALPAEPAAAKSEPKPTTKAAPKSSGGDDW 670 AAS A+ A P PV KA T GGD+W Sbjct: 533 AAASHHAPAKRAI--AAPTPVSPKAAT----------------------------GGDEW 562 Query: 671 EEF 673 EEF Sbjct: 563 EEF 565 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.125 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 923,689 Number of extensions: 33083 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 15 Length of query: 673 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 585 Effective length of database: 710,387 Effective search space: 415576395 Effective search space used: 415576395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)