BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3123.p
         (267 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095423|ref|YP_001100498.1| putative Uracil DNA glycosylase...   338   2e-94

>gi|134095423|ref|YP_001100498.1| putative Uracil DNA glycosylase
           [Herminiimonas arsenicoxydans]
          Length = 264

 Score =  338 bits (867), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 168/258 (65%), Positives = 195/258 (75%)

Query: 10  LPACLLELIQTAHPSWHAALRAGLEAIQQADPAYLGTLAQDDYLPTEGRLFAAFQQPLDQ 69
           +P   + ++  A  SW   LRAGL+A+ +  P YL  LA D+YLP  GRLFAAF QPLD 
Sbjct: 5   IPPSFIAMLDAADASWRPILRAGLDAVHKTSPDYLPALAADEYLPNGGRLFAAFAQPLDA 64

Query: 70  VRYVLVGEGPYPRAASATGVCFMDGAVGSLWSDKGLSKQVNRATSLRNFMKMLLVADGRL 129
           V YVLVGEGPYPRA SATGVCFMDGAV SLWS+KGLSKQVNRATSLRNFMKMLLVADG+L
Sbjct: 65  VDYVLVGEGPYPRAVSATGVCFMDGAVSSLWSEKGLSKQVNRATSLRNFMKMLLVADGQL 124

Query: 130 QAGNTSGDALAGIAAQAQADVQGTIQTLADLQDNLTAQGFLLLNASLVFRAHVAPLKDAR 189
               T+GDALAG++ +AQA     IQTL +LQ NLT  GFLLLNA+LVFR HV P+K+AR
Sbjct: 125 AIEQTTGDALAGVSGKAQAAPASIIQTLPELQANLTRHGFLLLNAALVFRPHVPPVKEAR 184

Query: 190 AWKPFFETVLRALAEHGQAQRRPLPTLVLWGKIAEQLHSLPLVEQFPRAVAEHPYNLSFI 249
           AW PF +TVL ALA+H +   +  PTLVLWGKIA QL + P   +FP+ V+EHPYNLSFI
Sbjct: 185 AWLPFLQTVLAALADHAEDAGKTPPTLVLWGKIAVQLEAFPESARFPKKVSEHPYNLSFI 244

Query: 250 EHSGMQALFGAMQLLKKK 267
            +  MQ LFG MQLLKK 
Sbjct: 245 GNQVMQNLFGDMQLLKKN 262


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 479,814
Number of extensions: 18108
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 187
Effective length of database: 736,747
Effective search space: 137771689
Effective search space used: 137771689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)