BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3122.p (693 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095424|ref|YP_001100499.1| excinuclease ABC subunit B [Her... 1247 0.0 gi|134095237|ref|YP_001100312.1| excinuclease ABC subunit B [Her... 631 0.0 >gi|134095424|ref|YP_001100499.1| excinuclease ABC subunit B [Herminiimonas arsenicoxydans] Length = 694 Score = 1247 bits (3227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/692 (86%), Positives = 641/692 (92%) Query: 1 MAELTPINPELDESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVT 60 M +L+ + +DESK VTFPDSPF+LYQ FPPAGDQP AI KLVEG+ DGLFYQTLLGVT Sbjct: 1 MTDLSQVADSIDESKIVTFPDSPFRLYQPFPPAGDQPTAIAKLVEGIEDGLFYQTLLGVT 60 Query: 61 GSGKTYTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAY 120 GSGKTYT+AN IAR+GRPAIVFAPNKTLAAQLYSEFREFFP NAVEYFVSYYDYYQPEAY Sbjct: 61 GSGKTYTVANVIARMGRPAIVFAPNKTLAAQLYSEFREFFPQNAVEYFVSYYDYYQPEAY 120 Query: 121 VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTL 180 VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVI+ATVSAIYGIGNP+EYHQMILTL Sbjct: 121 VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIIATVSAIYGIGNPSEYHQMILTL 180 Query: 181 RAKDKVSQRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEI 240 RAKDKVSQRDVIARLI MQYTRNEVDFGRGTFRVRGDTID+FPAEHAELA+R+E FDDEI Sbjct: 181 RAKDKVSQRDVIARLIAMQYTRNEVDFGRGTFRVRGDTIDIFPAEHAELAIRLEMFDDEI 240 Query: 241 DSLQLFDPLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLI 300 +SLQLFDPLTGRV+QKIPRFT+YPGSHYVTPR+TVLRAI+TIK+EL ERLEFFRKENKLI Sbjct: 241 ESLQLFDPLTGRVKQKIPRFTVYPGSHYVTPRATVLRAIDTIKDELRERLEFFRKENKLI 300 Query: 301 EEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGGKPGDPPPTLVDYLPKDALMFLDESH 360 EEQRLEQRTRFD+EMM EIGFTKGIENYSRHLSG K GDPPPTLVDYLP+DALMF+DESH Sbjct: 301 EEQRLEQRTRFDLEMMQEIGFTKGIENYSRHLSGAKAGDPPPTLVDYLPQDALMFMDESH 360 Query: 361 VLIGQLNGMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTVFVSATPADYEN 420 VL+GQLNGMYNGDRARK NLVDYGFRLPSALDNRPL+FDEFE KMRQ VFVSATPADYEN Sbjct: 361 VLMGQLNGMYNGDRARKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQMVFVSATPADYEN 420 Query: 421 THADQVVEQVVRPTGLVDPVIAVRPATTQVDDLMQEIHDRIAKNERVLVTTLTKRMAEQL 480 HADQVVEQVVRPTGLVDP+I+VRPA+TQVDDLM EI DR+ K+ERVLVTTLTKRM+EQL Sbjct: 421 AHADQVVEQVVRPTGLVDPLISVRPASTQVDDLMTEITDRVKKHERVLVTTLTKRMSEQL 480 Query: 481 TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILD 540 TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLD+PEVSLVAILD Sbjct: 481 TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILD 540 Query: 541 ADKEGFLRSERSLIQTIGRAARNLNGMAILYGDVVTDSMHKAISETERRRAKQLAFNEAN 600 ADKEGFLRSERSLIQTIGRAARNLNGMAILYGD VTDSM +AI ETERRRAKQ+AFN AN Sbjct: 541 ADKEGFLRSERSLIQTIGRAARNLNGMAILYGDKVTDSMRRAIDETERRRAKQMAFNTAN 600 Query: 601 GIVPTGIKKEIRELIDGIFNPAQARTELMVAEEKKNYESMSEKQISKEIKRLEKQMQEHA 660 I P GIKK IRELIDG+++ AR E A+E YE+MSEKQ+SKEIKRLEKQM HA Sbjct: 601 NITPVGIKKHIRELIDGVYSQQDAREEFNAAQEHAKYEAMSEKQVSKEIKRLEKQMLGHA 660 Query: 661 KNLEFEKAAAARDQLHLLKQQLFGAPGSDTAV 692 KNLEFEKAA RDQL +LK+QLFGAPG D V Sbjct: 661 KNLEFEKAAQVRDQLRILKEQLFGAPGEDHIV 692 >gi|134095237|ref|YP_001100312.1| excinuclease ABC subunit B [Herminiimonas arsenicoxydans] Length = 609 Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/617 (51%), Positives = 418/617 (67%), Gaps = 11/617 (1%) Query: 68 MANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPQRDLF 127 MAN I RL RP ++ APNKTL AQLY E + FFP NAVEYFVSYYDY+QPE Y+P D F Sbjct: 1 MANVIHRLKRPTLILAPNKTLTAQLYGEMKHFFPENAVEYFVSYYDYFQPEIYMPGTDRF 60 Query: 128 IEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRAKDKVS 187 I KDS+IN+H+E++RLS TKSL+ERRDV++VA+VS+IYG+G+P Y + + L K++ Sbjct: 61 IPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPEAYRALQIALSPGVKLN 120 Query: 188 QRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEIDSLQLFD 247 QR++I RL +QY R E R TFR +GD ID+FPA+ AVR+E DD + S+Q D Sbjct: 121 QRELIRRLALLQYDRTERTLKRATFRAQGDVIDIFPADSEHRAVRVELLDDSVASVQWLD 180 Query: 248 PLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLIEEQRLEQ 307 P+TG+ I + + P + + P + + A + I ++ ER+ + N+L+E RL + Sbjct: 181 PVTGKTLGAIDHYLVSPKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYE 240 Query: 308 RTRFDIEMMTEIGFTKGIENYSRHLSGGKPGDPPPTLVDYLPKDALMFLDESHVLIGQLN 367 R D+EMM E+G+ G+ENYS + S P PP TL+DYLPKD L+F+DESHV++ Q++ Sbjct: 241 RITHDVEMMREVGYCSGMENYSCYFSERDPASPPITLLDYLPKDGLLFVDESHVMVPQIS 300 Query: 368 GMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTVFVSATPADYE-NTHADQV 426 MY GD+ARK L+DYGFRLPS+ +NRPL F EFEK QT+FVSATP DYE D+V Sbjct: 301 AMYRGDQARKETLIDYGFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGDYELRVSKDRV 360 Query: 427 VEQVVRPTGLVDPVIAVRPATTQVDDLMQEIHDRIAKNERVLVTTLTKRMAEQLTEFLSD 486 VEQV+RPTGL+DP + VR A +DDL+ EI + K RVLVTTLTK AE+LT+FL+D Sbjct: 361 VEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKKKNRVLVTTLTKVSAEELTDFLTD 420 Query: 487 NGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGF 546 NGI+ RY+HSDI +RVEII LR G FDVL+GI+LLREGLDIPE SLVAILDAD+ GF Sbjct: 421 NGIRARYMHSDIKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGF 480 Query: 547 LRSERSLIQTIGRAARNLNGMAILYGDVVTDSMHKAISETERRRAKQLAFNEANGIVPTG 606 LRS +LIQ IGR ARN NG AILY D VT +M +AI ET RRR Q+AFNE NGI P Sbjct: 481 LRSAHALIQMIGRVARNENGKAILYADAVTPAMKQAIDETNRRRQLQIAFNEENGISPAS 540 Query: 607 IKKEIRELIDGIFNPAQARTELMVAEEKKNYESMSEKQISKEIKRLEKQMQEHAKNLEFE 666 +R+L + TE + E++S+ + +I E+Q+ E + + Sbjct: 541 ---SVRKLAG-----EETNTEEPTVHSEAFCENLSD--LCDQITAKEQQLLEFTDTGDEQ 590 Query: 667 KAAAARDQLHLLKQQLF 683 + R QL L +Q Sbjct: 591 RVEDIRRQLDGLYRQFI 607 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,282,316 Number of extensions: 53655 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 2 Length of query: 693 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 605 Effective length of database: 710,387 Effective search space: 429784135 Effective search space used: 429784135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)