BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3117.p (455 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095305|ref|YP_001100380.1| putative permease [Herminiimona... 82 8e-17 gi|134094710|ref|YP_001099785.1| putative transport protein [Her... 68 8e-13 gi|134093380|ref|YP_001098455.1| putative transporter [Herminiim... 58 9e-10 >gi|134095305|ref|YP_001100380.1| putative permease [Herminiimonas arsenicoxydans] Length = 450 Score = 81.6 bits (200), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 97/449 (21%), Positives = 190/449 (42%), Gaps = 43/449 (9%) Query: 22 VKPTHIRYLILFLLFVVTTVNYADRATLSIAGSAMKTELSLDPVTMGYIFSAFSWAYVLA 81 V + + + ++ LF+ V Y DR ++S A M+ +L G F Y L Sbjct: 24 VAYSKVTWRLIPFLFICYIVAYLDRTSISFAQMQMQNDLGFSAAIYGLGAGIFFIGYSLF 83 Query: 82 QLPGGWLLDRFGSKTIYMWSIALWSFFTFLQAGVTWMSTGAAVVALFLLRFMVGLAEAPS 141 ++P L+ R G++ + + LW + G+ +++T + +++RF++G+ EA Sbjct: 84 EVPSNMLMQRIGARKTLLRIMVLWGI---VATGMMFVTTP---MQFYVMRFLLGVFEAGF 137 Query: 142 FPANGRIVAAWYPTKERGTASAIFNSAQYFAAVIFTPLMAWIVHSYS-------WHHVFT 194 FP + WYP RG ++F + V+ P+ W ++S W +F Sbjct: 138 FPGVIYFLTKWYPGSRRGAVLSMFMLGMPISGVLGGPIAGWALNSLDGVNGWEGWQWLFF 197 Query: 195 VMGVVGILLALIWGRIIYSPKDHPRINAAELHHIESGGGLVDMDNKKVAAPSVQGKGYLR 254 + G+ ILL L+ + + D P A L E + ++ + P G L Sbjct: 198 IEGLPAILLGLM---VYWILCDEPS-QAKWLTERERALIIRNVKVDQANNPPEHGHSMLS 253 Query: 255 QLLSNRMLLGVYIGQYCINVITYFFLT-------WFPVYLVQERGMSILKAGFVASIPAV 307 L +R+ Y +++ + F++ W P L + + + G + IP Sbjct: 254 ALKDSRV--------YILSLSYFTFISGIYAIGFWLPAMLKNAGVIDVFQIGLYSMIPFG 305 Query: 308 CGFIGGVVGGLISDRLIKSGLSVTWSRKI-PIVGGMLLSMTMILCNYVQAQWLVVGIMAL 366 IG V+ SD+ ++ W + +G LS + + +V+ + Sbjct: 306 ISAIGMVLISRSSDKRLER----RWHLALCAFIGAASLSAITMFSADLTMSLIVMTVATT 361 Query: 367 AFFGKGVGALGWAVVADTAPKQIVGL-SGGLFNMFGNVAGITTPIVIGYIVKETGSFSGA 425 A + + L W++ + + S L N G + G+ +P +IG++ TGS S Sbjct: 362 AIY--TLLPLFWSITSAYFTGTVAAAGSIALINSLGLIGGMASPSIIGWVKTTTGSMSNG 419 Query: 426 LVFVGINALVTVISYLVIVKEIKRVELKD 454 L I+A++ V+ +V++ IK ++++ Sbjct: 420 L--FAISAML-VLGGIVLLVGIKAKDIRE 445 >gi|134094710|ref|YP_001099785.1| putative transport protein [Herminiimonas arsenicoxydans] Length = 435 Score = 68.2 bits (165), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 94/414 (22%), Positives = 167/414 (40%), Gaps = 41/414 (9%) Query: 31 ILFLLFVVTTVNYADRATLSIAGSAMKTELSLDPVTMGYIFSAFSWAYVLAQLPGGWLLD 90 +L LF+ Y DR + A +M +L G F Y L ++P ++ Sbjct: 27 LLPFLFICYVAAYLDRVNVGFAKLSMLNDLQFSETVYGLGAGIFFIGYFLFEVPSNIIMH 86 Query: 91 RFGSKTIYMWSIALWSFFTFLQAGVTWMSTGAAVVALFLLRFMVGLAEAPSFPANGRIVA 150 R G++ + WS + VT + +++RF++G+AEA FP + Sbjct: 87 RVGARVWIARIMITWSVLSAATMFVT------SPTMFYVIRFLLGVAEAGFFPGIVLYLT 140 Query: 151 AWYPTKERGTASAIFNSAQYFAAVIFTPLMAWIVHS-------YSWHHVFTVMGVVGILL 203 W+P+ RG +A+F A V+ PL WI++ Y W +F + + +LL Sbjct: 141 YWFPSSRRGRMNALFMIGIPIAGVVGGPLSGWIMNHFAGANGWYGWQWLFLLEAIPSLLL 200 Query: 204 ALIWGRIIYSP---KDHPRINAAELHHIESGGGLVDMDNKK---VAAPSVQGKGYLRQLL 257 +I + Y P + ++ E +E D K VA K +L + Sbjct: 201 GVI--TLFYLPNTIRASTWLSENEKQVLEENIAQDGSDTSKSHSVAGVFTNPKVWLMAAI 258 Query: 258 SNRMLLGVYIGQYCINVITYFFLTWFPVYLVQERGM-SILKAGFVASIPAVCGFIGGVVG 316 ++G+Y I+++ T LV+ G+ L G + +IP CG I ++ Sbjct: 259 YFCCMMGLY-------GISFYLPT-----LVKASGVKDALDVGLLTAIPYTCGVIATLLV 306 Query: 317 GLISDRLIKSGLSVTWSRKI-PIVGGMLLSMTMILCNYVQAQWLVVGIMALAFFGKGVGA 375 +DR+ + W I +GG+ L ++ + + V L + + Sbjct: 307 ARSADRMRER----RWHFAIASALGGLGLFLSTVYGDNVVLALLALSLGTAGML--STMP 360 Query: 376 LGWAVVADTAPKQIVGLSGGLFNMFGNVAGITTPIVIGYIVKETGSFSGALVFV 429 + W + GL N GN+AG +P ++G++ TGS + + FV Sbjct: 361 VFWTYPSAILGGAAAAAGIGLINSVGNLAGFVSPSIVGWLKDVTGSTNAGMYFV 414 >gi|134093380|ref|YP_001098455.1| putative transporter [Herminiimonas arsenicoxydans] Length = 460 Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 99/442 (22%), Positives = 170/442 (38%), Gaps = 59/442 (13%) Query: 45 DRATLSIAGSAMKTELSLDPVTMGYIFSAFSWAYVLAQLPGGWLLDRFGSKTIYMWSIAL 104 D ++ ++K E L G + S+ L G L D++G K ++ WS+ Sbjct: 43 DLGIMTFVLGSIKAEFGLSTAQAGLLASSSFLGMFLGAAIAGMLADKYGRKPVFQWSMVF 102 Query: 105 WSFFTFLQAGVTWMSTGAA--VVALFLLRFMVGLAEAPSFPANGRIVAAWYPTKERGTAS 162 W GV ++ G A V L + R ++G FP +V+ P K RG Sbjct: 103 W--------GVGSLACGFAQDVDQLMIFRVILGFGMGMEFPIGLSMVSEIVPAKSRGKYV 154 Query: 163 AI---FNSAQYFAAVIFTPLMAWIVHSYSWHHVFTVMGVVGILLALIWGRIIYSPK---- 215 AI F + AA I L ++ W +F + V + +I + SP+ Sbjct: 155 AILEGFWPLGFIAAGILAYLTLPLI---GWRGIFIALSVPAAFVFVIRRYVPESPRWLEE 211 Query: 216 ------DHPRINAAELHHIESGGGLVDMDNKKVAAPSVQGKGYLRQLLSNRMLLGVYIGQ 269 I+ E I + GGL + K AAPS+ KG R L + + GVY + Sbjct: 212 VGRNEEAEKVISTMEKSVIRANGGLALPEPAKQAAPSLL-KGDKRALFAE-LWHGVYAKR 269 Query: 270 -------YCINVITYFFLTWFPVYLVQERGMSILKA---GFVASIPAVCGFIGGVVGGLI 319 + ++ Y+ LT + L+Q+ G + K+ S+ + GFI Sbjct: 270 TIMLWALWFFALLGYYGLTTWLGALLQQAGYEVTKSVTYTIYISLAGIPGFI-------- 321 Query: 320 SDRLIKSGLSVTWSRKIPIVGGMLLSMTMILCNYVQA-------QWLVVGIMALAFFGKG 372 + L W RK P ML+ Y Q + L+ + + FF G Sbjct: 322 ----FSAWLLEKWGRK-PTCVLMLVGSAGAAYVYGQTASAQAPVEQLIASGLCMQFFMFG 376 Query: 373 VGALGWAVVADTAPKQIVGLSGGLFNMFGNVAGITTPIVIGYIVKETGSFSGALVFVGIN 432 + ++ +A + P + G + G + + P+ +G I+ TG +G ++ Sbjct: 377 MWSVLYAYTPELYPTRSRATGAGFASSVGRLGSLLGPLAVGLILPFTGH-TGVFTLGAVS 435 Query: 433 ALVTVISYLVIVKEIKRVELKD 454 ++ + + E K L+D Sbjct: 436 FMIAAFVVIALGTETKGKSLED 457 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.327 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 909,350 Number of extensions: 40722 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 199 Number of HSP's successfully gapped: 5 Length of query: 455 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 370 Effective length of database: 720,272 Effective search space: 266500640 Effective search space used: 266500640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)