BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3116.p
         (522 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096487|ref|YP_001101562.1| putative D-galactarate dehydrat...   139   4e-34

>gi|134096487|ref|YP_001101562.1| putative D-galactarate
           dehydratase/Altronate hydrolase, C-terminal
           [Herminiimonas arsenicoxydans]
          Length = 389

 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 177/387 (45%), Gaps = 31/387 (8%)

Query: 119 TFEGYRNADGSVGTRNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVALEHTYG 178
           TF GYR  +G VG RN + I           E               N++  +A+ H YG
Sbjct: 7   TFLGYRRENGRVGVRNHVIILPLDDLSNAACEAVAN-----------NIKGTMAIPHPYG 55

Query: 179 ---CGVAIDAPNAGIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHKEG 235
               G  +D     +  RTL     NPN    A VV +G E     +++      I   G
Sbjct: 56  RLQFGADLD-----LHFRTLIGTGSNPNV---AAVVVIGIEDSWTKKIVD----GIAATG 103

Query: 236 EPYVVCLQDAQHVGFNSMIDSIMNMAEARLTELNKRRRETCPASDLVVGVQCGGSDAFSG 295
           +P VV      H G +  I +    A   +   ++++RE C   +L V  +CG SD  SG
Sbjct: 104 KP-VVGFGIEGH-GDHETIMNASKKAREFMQWASEKKREECHIKELWVSTKCGESDTTSG 161

Query: 296 VTANPAVGYATDLLVRAGASVMFSEVTEVRDGIDQLTSRAINEEVAQAMIREMDWYDNYL 355
             ANP VG A D L   G++++F E +E+  G   L +R  N+EV +  +   D Y + +
Sbjct: 162 CGANPTVGAAFDKLHALGSTLVFGETSEITGGESILAARCANDEVRKQFMFMFDRYQDMI 221

Query: 356 KQGGVDRSANTTP--GNKKGGLANIVEKAMGSIVKSGSS-PISGVLAPGDKLQQKGLIYA 412
            +      +++ P  GN  GGL  I EKAMG+I K G    + GV+   +     GL + 
Sbjct: 222 NRHKTSDLSDSQPTKGNIAGGLTTIEEKAMGNIQKIGKKCTVDGVIDKAEMPTHSGLWFM 281

Query: 413 ATPASDFICGTLQLAAGMNLHIFTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMDVNAG 472
            + ++     TL  A+G  +H F TG+G   G   +PVIK+       R   + +D++  
Sbjct: 282 DSSSAAAEMVTLCAASGFVVHFFPTGQGNVIGNPILPVIKICANPRTVRLMSEHIDLDCS 341

Query: 473 RIASGEATIEQVGWELFQLMLDVASGR 499
            +   E T+EQ G +L ++M+  A+GR
Sbjct: 342 GLLQRELTLEQTGDKLLEMMISTANGR 368


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,062,448
Number of extensions: 46613
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 436
Effective length of database: 716,977
Effective search space: 312601972
Effective search space used: 312601972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)