BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3114.p (594 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 435 e-123 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 404 e-114 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 380 e-107 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 378 e-106 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 377 e-105 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 435 bits (1118), Expect = e-123, Method: Compositional matrix adjust. Identities = 280/558 (50%), Positives = 364/558 (65%), Gaps = 29/558 (5%) Query: 1 MRNLTVRFSLMSALALFSIMIVVGAAVGIFALGRANQATE--YVHEIAEHVIIINDAYKD 58 ++N++++F L+ + +M++VG A+GI + N + YV+++ I Sbjct: 2 LKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAI------H 55 Query: 59 STRTRSALTRAYANL-KEKNDPAIAEGALKSAQGSYERGLKFVDEFSKLPDLAGEEPVVK 117 S TR RA NL + +E LK A+ Y + + ++ LP EE V Sbjct: 56 SMMTRLLQARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVA 115 Query: 118 KELIESARSLSELLMKASGLLKAGDASAYSELNDKQIN---PAGARFSKALDEFQKRAMK 174 E+ +A+ + L GL+ A A E+ D +N P +K+ DE + MK Sbjct: 116 DEV--TAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMK 173 Query: 175 LNDTAANERQREYSMVVWLVVVGLIGAMFLVIGV----HFMLRNIVLTPLNRAVHLLDLV 230 +AA Q ++ + ++ ++G + +IGV F++R I PL + D + Sbjct: 174 ---SAATGYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAIT-GPLKEMLLHFDTI 229 Query: 231 ANGDLTTKVEVQSSNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLS 290 A+GDLT+ +EV+S NE+G L ++ MQ+ L TV++VR S +I T+ EIAAGN+DLS Sbjct: 230 ASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLS 289 Query: 291 SRTEQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVAQVVDTMQ 350 SRTEQQA+SLEETA+SME+LT TVKQN DNA QANQLA SAS+ A KGG VV+ VV+TM Sbjct: 290 SRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMD 349 Query: 351 AINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA 410 AIN S+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA Sbjct: 350 AINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA 409 Query: 411 AAKEIKSLIDDSVDKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQ 470 AAKEIK LIDDSV+KV+AG++LV +AG TM+EVV SV+RVTDI+ EI AS+EQS GIEQ Sbjct: 410 AAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQ 469 Query: 471 VNRAITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKINAQQAASAPKPRPAP 530 VN AI QMDEVTQQNAALVEQAAAAA SL+ QATNL VS+FK+ Q+A P Sbjct: 470 VNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGHQSA------PQN 523 Query: 531 VAPVAPPPAAPA-PAPVA 547 + P A P A + PA +A Sbjct: 524 LVPQARPKALESRPAAIA 541 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 404 bits (1037), Expect = e-114, Method: Compositional matrix adjust. Identities = 242/402 (60%), Positives = 291/402 (72%), Gaps = 30/402 (7%) Query: 193 LVVVGLIGAMFLVIGVHFMLRNIVLTPLNRAVHLLDLVANGDLTTKVEVQSSNEIGRLFA 252 L+V+GL+ A+ L I + +ML + PL+ AV + LVA+GDLT ++ V S +E G+L Sbjct: 190 LIVLGLV-ALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVDSKDETGQLLQ 248 Query: 253 AIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSLEETAASMEQLTG 312 A++ M +L ++++VRS D+I T++ +IA+GN+DLSSRTE+QASSLEETA+SME+LT Sbjct: 249 ALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEELTS 308 Query: 313 TVKQNADNALQANQLAHSASSTASKGGEVVAQVVDTMQAINASSRKIVDIISVIDGIAFQ 372 TVKQNADNA QANQLA +AS A KGG VV++VVDTM IN S+RKIVDII VIDGIAFQ Sbjct: 309 TVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGIAFQ 368 Query: 373 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVDKVEAGSQL 432 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK+LIDDSVDKV+ GS+L Sbjct: 369 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSKL 428 Query: 433 VEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEQA 492 V +AG TM EVV SV+RVTDI+ EI AS+EQS GIEQVN+AI QMD+VTQQNAALVE+A Sbjct: 429 VAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEA 488 Query: 493 AAAAQSLQAQATNLVGAVSIFKINAQQAASAPKPRPAPVAPVAPPPAAPAPAPVAAVTAA 552 AAAA+SL QA NL AVSIFK++ A R A PVA APA A A+ Sbjct: 489 AAAAESLNEQAANLAQAVSIFKLD----GVANSSRVATRLPVAASN-APATRQFA---AS 540 Query: 553 PAAAKAAPKLPPAKLPPAKPAKAAPAAPASRLKDDAQDWEEF 594 PA K A + P DWEEF Sbjct: 541 PAPKKIANETRPVS---------------------GDDWEEF 561 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 380 bits (977), Expect = e-107, Method: Compositional matrix adjust. Identities = 222/339 (65%), Positives = 262/339 (77%), Gaps = 14/339 (4%) Query: 219 PLNRAVHLLDLVANGDLTTKVEVQSSNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTS 278 PL AV + VA GDL ++EV SS+E G+L A+R M L+ +VS VR+ ++I T+ Sbjct: 219 PLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATA 278 Query: 279 AKEIAAGNMDLSSRTEQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKG 338 + +IAAGN+DLSSRTE+QASSLEETA+SME+LT TVKQNADNA QANQLA SAS A KG Sbjct: 279 SNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKG 338 Query: 339 GEVVAQVVDTMQAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 398 G VV+QVVDTM+ IN+S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 339 GVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 398 Query: 399 SEVRSLAQRSAAAAKEIKSLIDDSVDKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIA 458 SEVR+LAQRSAAAAKEIK+LI DSVDKV+ GS+LV +AG TM EVV SV+RVTDI+ EI Sbjct: 399 SEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIM 458 Query: 459 EASREQSTGIEQVNRAITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKINAQ 518 AS+EQS GIEQVN+AI QMD+VTQQNAALVE+AAAAA+SL QA L AVS+FK++ Sbjct: 459 AASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDG- 517 Query: 519 QAASAPKPRP-------------APVAPVAPPPAAPAPA 544 AAS P + A A AP P +P A Sbjct: 518 VAASTPATKTVRKIAAAASHHAPAKRAIAAPTPVSPKAA 556 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 378 bits (971), Expect = e-106, Method: Compositional matrix adjust. Identities = 227/405 (56%), Positives = 293/405 (72%), Gaps = 25/405 (6%) Query: 194 VVVGLIGAMFLVIGVHFMLRNIVLTPLNRAVHLLDLVANGDLTTKVEV-QSSNEIGRLFA 252 +++G + A+ L + + L + PL+ A+ + + VA GDLT + ++ ++ +E G L + Sbjct: 192 LIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMAETQDEPGLLLS 251 Query: 253 AIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSLEETAASMEQLTG 312 A+ MQ L+ TV+++R +D+I T++ EIA+GN+DLSSRTEQQASSLEETA+SME+LT Sbjct: 252 ALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETASSMEELTS 311 Query: 313 TVKQNADNALQANQLAHSASSTASKGGEVVAQVVDTMQAINASSRKIVDIISVIDGIAFQ 372 TVKQNADN+ QANQLA +AS+ A KGG VV+QVVDTM AIN S++KIVDII VIDGIAFQ Sbjct: 312 TVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIAFQ 371 Query: 373 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVDKVEAGSQL 432 TNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK+LI DSV+KV+AGS+L Sbjct: 372 TNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGSKL 431 Query: 433 VEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEQA 492 V +AG TM E+V V+RV DI+ EI AS+EQS GIEQVN+A++QMD+VTQQNAALVE+A Sbjct: 432 VAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVEEA 491 Query: 493 AAAAQSLQAQATNLVGAVSIFKINAQQA-ASAPKPRPAPVAPVAPPPAAPAP--APVAAV 549 AAAA+SLQ QA NL AVS+F++ + A A + PR + P AAP + +++ Sbjct: 492 AAAAESLQDQARNLAEAVSVFRVGSGYATAQSAAPRTVQSTAMHKPLAAPVKKSSSSSSL 551 Query: 550 TAAPAAAKAAPKLPPAKLPPAKPAKAAPAAPASRLKDDAQDWEEF 594 T + AAPK P A DWEEF Sbjct: 552 TVTESKKVAAPK---------------PVAAG------GDDWEEF 575 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust. Identities = 272/607 (44%), Positives = 365/607 (60%), Gaps = 49/607 (8%) Query: 1 MRNLTVRFSLMSALALFSIMIVVGAAVGIFALGRANQATEYVHEIAEHVIIINDAYKDST 60 ++N+T++ L+ + + S++++ +G+ +L N+A V+E + + I ++ Sbjct: 2 LKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYE--DRTVPIGQL--NTV 57 Query: 61 RTRSALTRAYANLKEKNDPAIAEGALKSAQGSYERGLKFVDEF---SKLPD---LAGEEP 114 T S + + DP + + + + + + D F + P+ LA + Sbjct: 58 ITLSTINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVLADKFA 117 Query: 115 VVKKELIESARSLSELLMKASGLLKAGDASAYSEL----NDKQINPAGARFSKALDEFQK 170 +K +E A L A + G+ +E+ ++ I P A + +D + Sbjct: 118 ADRKIFLEKA------LQPAIAASRGGNVLRVTEIVNGPMEELITPVRAGVAALIDLELR 171 Query: 171 RAMKLNDTAANERQREYSMVVWLVVVGLIGAMFLVIGVHFMLRNIVLTPLNRAVHLLDLV 230 A K A E Q + MV + + +I + L + F L ++ PL+ AV + V Sbjct: 172 EAKK----AFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSV 227 Query: 231 ANGDLTTKVEVQSSNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLS 290 A GDLT ++ V S+NE G+L A++ M +L TVS VR +++I ++ EIA+GN DLS Sbjct: 228 AAGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLS 287 Query: 291 SRTEQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVAQVVDTMQ 350 SRTE QA SLEETA+SME+LT TV+QNADNA QANQL SA+ A KGG VV++VV TM Sbjct: 288 SRTEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMG 347 Query: 351 AINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA 410 +I SSRKIVDII VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA Sbjct: 348 SIKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAG 407 Query: 411 AAKEIKSLIDDSVDKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQ 470 AAKEIK+LIDDSV KV+AGS+LV+QAG+TM E+VTSV+ V DI+ EI AS+EQS GIEQ Sbjct: 408 AAKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQ 467 Query: 471 VNRAITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKINAQQAA---SAPKPR 527 VN+AI+QMDE+TQQNAALVEQAAAAAQS+Q QA L GAV+IFK++A +A SA R Sbjct: 468 VNQAISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKLDAGGSAMSTSASTRR 527 Query: 528 PAPVAPVAPPPAAPAPAPVAAVTAAPAAAKAAPKLPPAKLPPAKPAKAAPAAPASRLKDD 587 AP A P A+TAA P K + P P S K Sbjct: 528 AAPALQAANPATTS-----RALTAA----------------PHKQLETKPQKPISADK-S 565 Query: 588 AQDWEEF 594 DWEEF Sbjct: 566 GDDWEEF 572 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.124 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 696,020 Number of extensions: 22289 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 15 Length of query: 594 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 507 Effective length of database: 713,682 Effective search space: 361836774 Effective search space used: 361836774 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)