BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3113.p
         (306 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095359|ref|YP_001100434.1| dihydrodipicolinate synthase [H...    80   1e-16

>gi|134095359|ref|YP_001100434.1| dihydrodipicolinate synthase
           [Herminiimonas arsenicoxydans]
          Length = 292

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 8/197 (4%)

Query: 40  LEWLAPYGASALFAAGGTGEFFSLVPGEYSDIIRTAVDTCRGKVPIIAGAGG-STRAAIA 98
           ++W    G   +   G TGE  ++   E+ ++IR AV+    ++PIIAG GG ST  AI 
Sbjct: 28  IDWHIAEGTDGIVIVGTTGESPTVSVDEHCELIRVAVEHTAKRIPIIAGTGGNSTSEAIE 87

Query: 99  YAQEAERLGAHGILLMPHYLTEASQDGIAAHVEAVCKSVNFGVIIYN---RAVCKLNADT 155
             Q A+ +GA   L +  Y    +Q+G+  H + + ++V+   I+YN   R V  ++ +T
Sbjct: 88  LTQFAKDVGADASLQVVPYYNRPTQEGMYQHFKKIVEAVDLPAILYNVPGRTVADMSNET 147

Query: 156 LQKLAERCPNLIGFKDGIGEIEPMVHIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYS 215
           + +LA+  P++IG KD  G I   + + R     F    G    +  A A    G     
Sbjct: 148 ILRLAQ-IPSVIGVKDATGNISRGIDLMRLRPKDFAVYSG---DDATAMALMLCGANGNI 203

Query: 216 SAVFNFIPKTAVQFYQA 232
           S   N  P+   Q   A
Sbjct: 204 SVTANIAPRGMHQLCDA 220


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 628,200
Number of extensions: 27190
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 225
Effective length of database: 733,452
Effective search space: 165026700
Effective search space used: 165026700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)