BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3112.p
         (255 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg...    64   1e-11

>gi|134095895|ref|YP_001100970.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 247

 Score = 63.5 bits (153), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 111/252 (44%), Gaps = 32/252 (12%)

Query: 9   PLLRPRRKPQSLSQEVVATLSAMIDNGSIKPGEKLPTESEIMQTQGVSRTVVREAISRLQ 68
           PLL PR + Q L   VV  L  +I  G + PG KL  E E+ +  G+SRT +REA+  L 
Sbjct: 14  PLL-PRVERQRLHDAVVEHLQNLIIEGVLAPGMKL-NEREVCERLGISRTPLREAMKVLA 71

Query: 69  AAGLVETRHGIGTFVLEAKKGSNINIDPATITTMRDLLALLELRISLETETAGLAAARRS 128
           + GL++     G FV  +K   N            ++    E+   LE  +  LAA R S
Sbjct: 72  SEGLIDIAPNRGAFV--SKMNDN------------EIWEAFEMMSGLEALSGELAAERIS 117

Query: 129 EEQLQEIR---EALNLFRENQQNGGDTVGPDFR---FHFAIANATGNRYFIEIISHLGMG 182
             ++ +I+   EA+ + R   QN  D  G   R    H  I  A  N    +I   +   
Sbjct: 118 PAEIADIKVLHEAMLVCR--AQN--DLPGYYSRNQTIHNKINEAARNSMLRQIYLSIN-- 171

Query: 183 VIPRKRINTAELAHDQQSSYLDRVQREHEDIFDAIARGDSEAARAAMRNHLTNSRERLRR 242
               +R+       + Q +  DR   EH+++  A+   D +   A +R HL + R+ +  
Sbjct: 172 ----RRLLALRFKSNFQEAKWDRAIHEHDEMIKALESRDGKRLAAILRQHLLDKRDSVMA 227

Query: 243 AQQEAESGATTG 254
             +EA   A +G
Sbjct: 228 DLREAAGHAASG 239


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.130    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 404,647
Number of extensions: 14564
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 175
Effective length of database: 736,747
Effective search space: 128930725
Effective search space used: 128930725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)