BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3108.p
         (107 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095418|ref|YP_001100493.1| factor involved in Fe-S cluster...   211   6e-57
gi|134093528|ref|YP_001098603.1| iron-sulfur cluster insertion p...    65   8e-13

>gi|134095418|ref|YP_001100493.1| factor involved in Fe-S cluster
           assembly and activation [Herminiimonas arsenicoxydans]
          Length = 107

 Score =  211 bits (538), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 100/107 (93%), Positives = 104/107 (97%)

Query: 1   MAITLTEKAAKHISRYMERRGKGIGLRLGVRTTGCSGLAYKLEYVDEQAAEDTVFESHGV 60
           MAITLTEKAAKHI+RYMERRGKGIGLR GVRTTGCSGLAYKLEYVDE A+ED+VFESHGV
Sbjct: 1   MAITLTEKAAKHINRYMERRGKGIGLRFGVRTTGCSGLAYKLEYVDESASEDSVFESHGV 60

Query: 61  RVFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNVKDECGCGESFRI 107
           +VFVDPKSLPYIDGTELDFAREGLNEGFKF NPNVKDECGCGESFRI
Sbjct: 61  KVFVDPKSLPYIDGTELDFAREGLNEGFKFHNPNVKDECGCGESFRI 107


>gi|134093528|ref|YP_001098603.1| iron-sulfur cluster insertion
           protein ErpA [Herminiimonas arsenicoxydans]
          Length = 116

 Score = 65.1 bits (157), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 3   ITLTEKAAKHISRYMERRGK-GIGLRLGVRTTGCSGLAYKLEYVDEQAAEDTVFESHGVR 61
           I  ++ AA  ++  +E  G   + LR+ V+  GCSG  Y   + +    +DT    +GV+
Sbjct: 11  ILFSDSAAAKVAELIEDEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMTKNGVQ 70

Query: 62  VFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNVKDECGCGESF 105
           + +D  S  Y+ G E+D+  +     F  +NPN    CGCG SF
Sbjct: 71  LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSF 114


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 202,744
Number of extensions: 7538
Number of successful extensions: 15
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 1,000,347
Length adjustment: 69
Effective length of query: 38
Effective length of database: 772,992
Effective search space: 29373696
Effective search space used: 29373696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 122 (51.6 bits)