BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3107.p
         (171 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095417|ref|YP_001100492.1| co-chaperone protein Hsc20 [Her...   237   3e-64

>gi|134095417|ref|YP_001100492.1| co-chaperone protein Hsc20
           [Herminiimonas arsenicoxydans]
          Length = 171

 Score =  237 bits (604), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 133/169 (78%)

Query: 1   MQNHYDLFQLPQRFAVDQKALEQAYHQVQSQAHPDKFAHASDAEKRVAMQWATRANEAYQ 60
           MQNH+DLFQLPQRF++D +AL+QAYH+VQ+Q HPDKFA A DAEKRVAMQWATRANEAY 
Sbjct: 1   MQNHFDLFQLPQRFSIDARALDQAYHEVQNQVHPDKFASAPDAEKRVAMQWATRANEAYT 60

Query: 61  TLKNPLKRARYLCELHGVDLQTESNTAMAPAFLMQQMEWREMLDDAKAGKDVDALERLNA 120
           TLKNP KRA YLCEL+GVDLQ ESNTAM  AFLMQQMEWRE LDDA+A K+ D LE L+ 
Sbjct: 61  TLKNPFKRAAYLCELNGVDLQVESNTAMPLAFLMQQMEWREALDDARARKNRDELEALDT 120

Query: 121 ELLAEKKAEIARIEALLDAADYAAAGQLVRQLMFLDKFGAEIGDAFALI 169
            +   +K  +  I  LLD  D+A A  LVRQLMFL+KF AE+  A  ++
Sbjct: 121 AIRTARKTSLEEIGVLLDGDDFAGAAGLVRQLMFLEKFSAEVSHALDVL 169


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 253,244
Number of extensions: 7409
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 96
Effective length of database: 753,222
Effective search space: 72309312
Effective search space used: 72309312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)