BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3105.p (621 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095416|ref|YP_001100491.1| chaperone protein HscA [Hermini... 1040 0.0 gi|134095815|ref|YP_001100890.1| molecular chaperone DnaK [Hermi... 439 e-124 gi|134094326|ref|YP_001099401.1| putative heat-shock protein Hsp... 86 5e-18 >gi|134095416|ref|YP_001100491.1| chaperone protein HscA [Herminiimonas arsenicoxydans] Length = 620 Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/620 (83%), Positives = 573/620 (92%) Query: 1 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSIVRYL 60 MALLQI+EPGMSTAPHQ RLAVGIDLGTTNSLVATVRNSIPE+L D++GR LLPS+V YL Sbjct: 1 MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEILTDEEGRSLLPSVVHYL 60 Query: 61 PNGHANIGYKAQAAQTIDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVA 120 NG A+IGYKAQAAQ DP+NTIVSVKRFMGRGLKDIA+AEN+PYDF D PGMVQ+KTVA Sbjct: 61 KNGSAHIGYKAQAAQNTDPKNTIVSVKRFMGRGLKDIAYAENLPYDFLDTPGMVQLKTVA 120 Query: 121 GVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLR 180 GVKSPVEVSA+ILATLRQ AEDALGDDLVGAVITVPAYFDDAQRQATKDAA+LAGLNVLR Sbjct: 121 GVKSPVEVSAEILATLRQQAEDALGDDLVGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180 Query: 181 LLNEPTAAAIAYGLDNASEGIFAVYDLGGGTFDISILKLTRGVFEVLATGGDSALGGDDF 240 LLNEPTAAAIAYGLDN SEG+FAVYDLGGGTFD+SILKLT+GVFEVL+TGGDSALGGDDF Sbjct: 181 LLNEPTAAAIAYGLDNGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTGGDSALGGDDF 240 Query: 241 DHRLFCWISQQAQLQPLSDEDTRLLMVKAREVKELLSTKDEVQIDAALKSGEQVHLSITA 300 DHRLFCWI +QA L PLS+ DT +LMVKARE KELLS+K E IDA L SGE+VH+++TA Sbjct: 241 DHRLFCWIIEQAGLAPLSEIDTSVLMVKAREAKELLSSKSETLIDAVLTSGEEVHVTVTA 300 Query: 301 AQFNEITQHLVAKTMTPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEFFKTNPL 360 A F ++TQHLV KT+TP +KALRDAGL+V+DVDGVV+VGGATRMPHIR+AVG+FF++ PL Sbjct: 301 ADFIQMTQHLVTKTITPTKKALRDAGLSVDDVDGVVMVGGATRMPHIRKAVGDFFQSTPL 360 Query: 361 SNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTIP 420 +NIDPDKVVALGAAVQANLLAGNRA GDDWLLLDVIPLSLGIETMGGL EKVIPRNSTIP Sbjct: 361 ANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGLVEKVIPRNSTIP 420 Query: 421 CARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQVD 480 CARAQEFTTFKDGQTA+A+H+VQGERELV DCRSLA+FELRGIPPMAAGAARIRVTYQVD Sbjct: 421 CARAQEFTTFKDGQTALAVHIVQGERELVTDCRSLAKFELRGIPPMAAGAARIRVTYQVD 480 Query: 481 ADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADEDMQRRALREEQVEA 540 ADGLL+VSARE+ SGVEASI+VKPSYGL DD+IA+MLQ+SF SAD DM RALREEQVEA Sbjct: 481 ADGLLSVSARELRSGVEASISVKPSYGLADDQIAQMLQDSFKSADVDMAARALREEQVEA 540 Query: 541 ERIVLATRSALQADAALLSEDERVAIEAQIEAVTAAAQGSDHLAIKAAVDALAHGTEEFA 600 ERIVLAT+SAL ADA+LLS++ER I A +++V A G+DHLAIKAAVDALAHGTEEFA Sbjct: 541 ERIVLATQSALDADASLLSDNEREDIVALLDSVRQAGSGTDHLAIKAAVDALAHGTEEFA 600 Query: 601 ARRMDRSVHAALAGKKLDEV 620 ARRMDRSV +AL+GKKLDE+ Sbjct: 601 ARRMDRSVRSALSGKKLDEI 620 >gi|134095815|ref|YP_001100890.1| molecular chaperone DnaK [Herminiimonas arsenicoxydans] Length = 649 Score = 439 bits (1130), Expect = e-124, Method: Compositional matrix adjust. Identities = 252/608 (41%), Positives = 377/608 (62%), Gaps = 37/608 (6%) Query: 22 VGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSIVRYLPNGHANIGYKAQAAQTIDPRN 81 +GIDLGTTNS VA + P+V+ + +G PS++ Y +G +G A+ +P+N Sbjct: 5 IGIDLGTTNSCVAIMEGGKPKVIENSEGARTTPSVIAYQEDGEILVGAPAKRQAVTNPKN 64 Query: 82 TIVSVKRFMGRGL------KDIAHAENMPY-----DFQDQPGMVQIKTVAGVKSPVEVSA 130 T+ +VKR +GR KDI MPY D D V+ K +A P ++SA Sbjct: 65 TLYAVKRLIGRKFDEKEVQKDIGM---MPYQIVKADNGDAWISVRDKKLA----PPQISA 117 Query: 131 QILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLRLLNEPTAAAI 190 + L +++TAED LG+++ AVITVPAYF+DAQRQATKDA ++AGL+V R++NEPTAAA+ Sbjct: 118 ETLRKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAAL 177 Query: 191 AYGLDNASEG--IFAVYDLGGGTFDISILKLT----RGVFEVLATGGDSALGGDDFDHRL 244 A+GLD +G AVYDLGGGTFDISI+++ FEVL+T GD+ LGG+DFD R+ Sbjct: 178 AFGLDKTGKGDRKIAVYDLGGGTFDISIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRV 237 Query: 245 FCWISQQAQL---QPLSDEDTRLLMVKA--REVKELLSTKDEVQIDA---ALKSGEQVHL 296 +I + + LS + L +KA K LS+ + +I+ A+ +G VHL Sbjct: 238 IDYIIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHL 297 Query: 297 S--ITAAQFNEITQHLVAKTMTPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEF 354 + IT A+ + + L++KT+ P+ A++DAG+ V D+D ++LVGG TRMP ++ V EF Sbjct: 298 TMKITRAKLESLVEELISKTLAPLSIAIKDAGVKVSDIDDIILVGGMTRMPKVQEKVKEF 357 Query: 355 FKTNPLSNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIP 414 F P +++PD+ VA+GAA+Q ++L+G+R D LLLDV PLSLGIET+GG+ K+I Sbjct: 358 FGKEPRKDVNPDEAVAVGAAIQGSVLSGDRK---DLLLLDVTPLSLGIETLGGVMTKMIQ 414 Query: 415 RNSTIPCARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIR 474 +N+TIP +Q F+T D Q A+ I V QGERE+ ++L F L GIPP A G +I Sbjct: 415 KNTTIPTKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTPQIE 474 Query: 475 VTYQVDADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADEDMQRRALR 534 VT+ +DA+G+L V A++ +G E IT+K + GL ++EI +M+Q++ ++A+ED + + + Sbjct: 475 VTFDIDANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVQDAEANAEEDKRLKEVA 534 Query: 535 EEQVEAERIVLATRSALQADAALLSEDERVAIEAQIEAVTAAAQGSDHLAIKAAVDALAH 594 E + +V +TR +L L E+ IEA I+ + A +GSD AI AL+ Sbjct: 535 EAHNHGDALVHSTRKSLTEYGDKLEAGEKEKIEAAIKDLEEALKGSDKAAIDEKSAALSA 594 Query: 595 GTEEFAAR 602 ++ + Sbjct: 595 AAQKLGEK 602 >gi|134094326|ref|YP_001099401.1| putative heat-shock protein Hsp 70 [Herminiimonas arsenicoxydans] Length = 416 Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 108/412 (26%), Positives = 162/412 (39%), Gaps = 103/412 (25%) Query: 21 AVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSIVRYLPNGHANIGYKAQAA-----Q 75 A G+D GT+NS V R + +L +DG+V LPS++ + N Y +AA Q Sbjct: 4 ACGVDFGTSNSTVGWSRPGVSPLLQLEDGKVTLPSVIFF--NADEEQVYYGRAALANYLQ 61 Query: 76 TIDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVAGVKSPVE-VSAQILA 134 + R + S+K +G L D DQ V G P + Q +A Sbjct: 62 GYEGR-LMRSLKSLLGTSLID------------DQ------TEVMGKALPFRTLLTQFIA 102 Query: 135 TLRQTAEDALGDDLVGAVITVPAYFDDAQRQA-------TKDAAQLAGLNVLRLLNEPTA 187 L++ AE A G + V+ P +F D +A + AQ G + EP A Sbjct: 103 ELKRRAETAAGREFSSVVLGRPVFFVDGNEEADILAEDTLYEIAQSVGFRDIDFQYEPIA 162 Query: 188 AAIAYGLDNASEGIFAVYDLGGGTFDISILKLT---------RGVFEVLATGGDSALGGD 238 AA Y E + + D+GGGT D S+++L R ++LATGG +GG Sbjct: 163 AAFDYESQIEREELVLIADIGGGTSDFSLVRLAPERAKKADRRD--DILATGG-VHIGGT 219 Query: 239 DFD-----------------------------HRLFCW------ISQQAQLQP------- 256 DFD + L W +Q+ LQ Sbjct: 220 DFDKYLSLTSIMPQLGLGSRLNNNNEVPSSYYYNLATWHTINLAYTQKTWLQIKDIYRDA 279 Query: 257 ------------LSDEDTRLLMVKAREVKELLSTKDEVQIDAALKSGEQVH-LSITAAQF 303 + L +KA E K LS + E Q+ L H L++ +F Sbjct: 280 MEKDKLDSLLHLIEHRSGHWLALKAEEGKIALSAELETQL--VLDRLVPAHTLTLRRDEF 337 Query: 304 NEITQHLVAKTMTPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEFF 355 ++ +VA + V LRDAG+T + VD VV GG++ + +R +G Sbjct: 338 DDAIHKMVAAVGSTVANLLRDAGITADQVDTVVFTGGSSGVHLLREKIGSLL 389 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,093,651 Number of extensions: 44877 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 3 Length of query: 621 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 534 Effective length of database: 713,682 Effective search space: 381106188 Effective search space used: 381106188 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)