BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3100.p (242 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095064|ref|YP_001100139.1| LuxR family transcriptional reg... 102 2e-23 gi|134095692|ref|YP_001100767.1| response regulator [Herminiimon... 96 2e-21 gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regula... 71 5e-14 gi|134093850|ref|YP_001098925.1| putative two-component system r... 71 6e-14 gi|134096209|ref|YP_001101284.1| response regulatory protein [He... 70 9e-14 >gi|134095064|ref|YP_001100139.1| LuxR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 215 Score = 102 bits (254), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 120/241 (49%), Gaps = 30/241 (12%) Query: 1 MTWKVGSKMRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLI 60 MT K K+ IA DDHA+VR GL + LA+ D V G E + R ++LL+ Sbjct: 1 MTTKNAIKVLIA--DDHAIVREGLKQILADTRDIVVAGHAENGSEAIRLSREGLCNVLLL 58 Query: 61 DYSLGSNDIDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSEL 120 D S+ D G+ +++ +R P+ IL+ S H + ++KAGA G++ K +EL Sbjct: 59 DISMP--DRSGIEVLKQVRKESPKIAILMLSMHREDQYAIRSLKAGAAGYLNKQSAPAEL 116 Query: 121 ILAIRAIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMP 180 + AIR + GR+Y+S +++ELA Q D + P +TLSD Sbjct: 117 VTAIRQVAAGRKYISAELAQELAN-QIND-----------------NHETPLHETLSD-- 156 Query: 181 NLSPREREVLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRSDNELFKIEYQIK 240 RE + L G +V+DIA + SVKTIS + +K+ +R + EL Y IK Sbjct: 157 ----REYQTLTMIASGKTVSDIAAELVLSVKTISMYRSRLLQKMKLRHNAEL--THYAIK 210 Query: 241 D 241 + Sbjct: 211 N 211 >gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans] Length = 210 Score = 95.9 bits (237), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 28/232 (12%) Query: 9 MRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSLGSND 68 ++I ++DDHAVVR G+ +A+ PD + G AT++E + +RA+ D++L+D ++ D Sbjct: 2 IKILVVDDHAVVRAGVQYFIAQVPDMCIEGEAATAQEAIRLVRAQDWDIVLLDINMP--D 59 Query: 69 IDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIRAIH 128 G+ +++ ++ P +L+ S H V +++GA G+V K EL+ AI+ I Sbjct: 60 KSGVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVTAIQTIL 119 Query: 129 TGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSPRERE 188 G +Y+S ++ L A DP A P +T LS RE E Sbjct: 120 RGHKYISHTVAELLTA--EVDPNADK----------------PLHET------LSKREYE 155 Query: 189 VLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRSDNELFKIEYQIK 240 + G VT IA++ SVKT+S + +K+ + +N I Y IK Sbjct: 156 IFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNM--ENNAGIIYYAIK 205 >gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regulator protein [Herminiimonas arsenicoxydans] Length = 235 Score = 70.9 bits (172), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 22/220 (10%) Query: 9 MRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSLGSND 68 + + L+DDH + R G+ L P+FSV+G A E + R D++L+D ++ Sbjct: 18 ISVLLIDDHTLFRSGIRSLLQRYPEFSVVGEAADGVEGIKRARQLQPDVVLLDLNMPG-- 75 Query: 69 IDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIRAIH 128 I GL ++ + P + +++ + + +A+++GARG++ K+ + L+ AI+ Sbjct: 76 ISGLQTLQLMLQDCPNTAVIMLTVSEDAEDLGVALQSGARGYLIKNIDADYLVRAIQRAA 135 Query: 129 TGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSPRERE 188 G ++ AM+ +L A Q + G R+E S++ L+PRER+ Sbjct: 136 AGEAVVAEAMTSKLIA-QLQNAGQRTEVR-------------------SELDKLTPRERD 175 Query: 189 VLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRS 228 +L C G S IA + T+ Q+ +KL + S Sbjct: 176 ILACLARGESNKLIARTLDVADSTVKIHVQNILKKLNLSS 215 >gi|134093850|ref|YP_001098925.1| putative two-component system response regulator [Herminiimonas arsenicoxydans] Length = 232 Score = 70.9 bits (172), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 35/225 (15%) Query: 11 IALLDDHAVVR---YGLAKRLAEEPDFSVI-GAFATSKELMTALRAEPADLLLIDYSLGS 66 + L++D ++R GL +L D V+ G+ A ++ M +P L L+D LG Sbjct: 21 VLLVEDEPLIRRRLEGLLLQLGYSSDALVMTGSLAEARACMVN---QPIALALVD--LGL 75 Query: 67 NDIDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIRA 126 D G++LI + + P ILV SA S+ ++ A++AGA G+V K ++ E+ L+IR+ Sbjct: 76 PDGSGIDLIAEMHMADPALPILVISAWSTEDAILAALRAGATGYVLKERDDMEVALSIRS 135 Query: 127 IHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPN---LS 183 + G GA +P A RR P + PN LS Sbjct: 136 VLRG--------------------GAPIDPFIA---RRIIDELRPKTMPHEKAPNNETLS 172 Query: 184 PREREVLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRS 228 PRE E+L GL+ +I+E+ S TI C + +RKL V S Sbjct: 173 PRESEILGLVAQGLANREISEQLHLSRYTIECHIKHIYRKLAVSS 217 >gi|134096209|ref|YP_001101284.1| response regulatory protein [Herminiimonas arsenicoxydans] Length = 238 Score = 70.1 bits (170), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 15/220 (6%) Query: 9 MRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSLGSND 68 + + +++D R L + +EP ++ A K + L +P D+LL+D LG D Sbjct: 11 ITVLVVEDDVATRRALCLGIKKEPALKLLAALDCVKSALDWLLHQPVDVLLVD--LGLPD 68 Query: 69 IDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIRAIH 128 G+++IR R P I+V + S +VV +++AGA G+V K ++ A+ +H Sbjct: 69 GSGIDIIRFCADRHPSCNIMVITTSSDQGSVVDSIEAGASGYVLKDAGPLDIGRALMELH 128 Query: 129 TGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSPRERE 188 G +S ++R++ AR RA N P L+ RE Sbjct: 129 AGGSPISPVIARKVL--------ARMRDGNKADGAVRAENAPGGQKVF-----LTRREAT 175 Query: 189 VLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRS 228 +L G S ++A + A SV T+ ++ + KL V S Sbjct: 176 ILDLIARGDSYCEVARELALSVGTVQTHIKNIYDKLSVHS 215 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 362,163 Number of extensions: 11860 Number of successful extensions: 77 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 71 Number of HSP's successfully gapped: 5 Length of query: 242 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 163 Effective length of database: 740,042 Effective search space: 120626846 Effective search space used: 120626846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)