BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3099.p
         (235 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094127|ref|YP_001099202.1| putative two-component system s...    86   1e-18
gi|134095906|ref|YP_001100981.1| putative composite two componen...    60   7e-11
gi|134094532|ref|YP_001099607.1| chemotactic response regulator ...    59   2e-10

>gi|134094127|ref|YP_001099202.1| putative two-component system
           sensory histidine kinase [Herminiimonas arsenicoxydans]
          Length = 466

 Score = 86.3 bits (212), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 15/215 (6%)

Query: 9   RVLLVDDSATIRYAMQNRLQMLGCQVDCVADGGSALAAIQAQSYGMVLLDCFLPDMPGPE 68
            +L+VDD+A      Q  L+  GC++D    G  AL     Q Y ++L+DC +P M G +
Sbjct: 219 HILVVDDNAVNLQVAQQMLERFGCKIDTAKSGAQALLLSGEQHYDLILMDCQMPQMDGYQ 278

Query: 69  VARQVRLLEQHDSTRSYTPLIGISAEADATHVQRCLDSGMDGTLDKPLQTVAIRRLLALW 128
               +R  E  D   ++  +IG SA  +      CL  GMD  + KP++  A+  +L  W
Sbjct: 279 TTALLRAAENAD---THAIIIGWSAGINRNERDTCLAIGMDDFISKPMRMHALNEMLMRW 335

Query: 129 CDHES--------GEDGAPATAEEEHSQ--DLARLFIQTAQSDLQALQQASVMGDAARLG 178
              +          +D   AT +   +   +LA+LF++ +   L  LQ+ASV  DA  + 
Sbjct: 336 LHAQPVCSVVTLQQDDELEATQQMFGADFIELAQLFLKDSPKRLTHLQEASVGKDAIAIA 395

Query: 179 QLTHRMKGAALTMGRAEIVALLECVEEALRADTDE 213
           +  H + G++ ++G + + AL  C E  +RA  +E
Sbjct: 396 KCAHVLCGSSASIGASALAAL--CRELEIRAKNEE 428


>gi|134095906|ref|YP_001100981.1| putative composite two component
            regulatory (sensor histidine kinase and response
            regulator hybrid) transcription regulator protein
            [Herminiimonas arsenicoxydans]
          Length = 1969

 Score = 60.5 bits (145), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 6/124 (4%)

Query: 10   VLLVDDSATIRYAMQNRLQMLGCQVDCVADGGSALAAIQAQSYGMVLLDCFLPDMPGPEV 69
            V++VDDS T+R   Q  L   G QV    DG  AL  +Q+ +  ++L+D  +P M G ++
Sbjct: 1847 VMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMDGFDL 1906

Query: 70   ARQVRLLEQHDSTRSY-TPLIGISAEADATHVQRCLDSGMDGTLDKPLQTVAIRRLLALW 128
             R +R     D  R+   P+I I++   + H    ++ G++  L KP Q  A+ +L+A +
Sbjct: 1907 TRNIR-----DDERTRDIPIIMITSRTASKHRNYAMELGVNEYLGKPYQEEALVKLIAGF 1961

Query: 129  CDHE 132
               E
Sbjct: 1962 IKKE 1965


>gi|134094532|ref|YP_001099607.1| chemotactic response regulator
           [Herminiimonas arsenicoxydans]
          Length = 132

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 7/124 (5%)

Query: 6   SGP--RVLLVDDSATIRYAMQNRLQMLG-CQVDCVADGGSALAAIQAQSYGMVLLDCFLP 62
           +GP  + L+VDD +T+R  ++N L+ LG   VD   DG  AL+ ++++++  V+ D  +P
Sbjct: 2   AGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVMALSKLRSETFDFVVSDWNMP 61

Query: 63  DMPGPEVARQVRLLEQHDSTRSYTPLIGISAEADATHVQRCLDSGMDGTLDKPLQTVAIR 122
           +M G  + +Q+R     D   S  P++ ++AEA   ++     +G +G + KP     + 
Sbjct: 62  NMDGLTMLQQIR----ADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLD 117

Query: 123 RLLA 126
             LA
Sbjct: 118 EKLA 121


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 379,986
Number of extensions: 13812
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 3
Length of query: 235
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 156
Effective length of database: 740,042
Effective search space: 115446552
Effective search space used: 115446552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)