BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3097.p
         (471 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094183|ref|YP_001099258.1| glutamine synthetase [Herminiim...   915   0.0  

>gi|134094183|ref|YP_001099258.1| glutamine synthetase
           [Herminiimonas arsenicoxydans]
          Length = 469

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/468 (91%), Positives = 453/468 (96%)

Query: 4   TAAEVLKMVKDNEVKFVDFRFADTRGKEQHVSVPVSHFDIDKFESGHAFDGSSIAGWKGI 63
           TAAEVLKMVKDNEVKFVDFRFADTRGKEQHV+VPVSHFD+DKFESGHAFDGSSIAGWKGI
Sbjct: 2   TAAEVLKMVKDNEVKFVDFRFADTRGKEQHVTVPVSHFDMDKFESGHAFDGSSIAGWKGI 61

Query: 64  EASDMLLIPDPNTANIDPFMEETTLFMQCDVIEPSDGKGYDRDPRSIAKRAEAYLKSSGL 123
           E+SDMLL+PDPNTANIDPF EETTLFMQCDVIEPSDGKGYDRDPRSIAKRAEAYLKSSG+
Sbjct: 62  ESSDMLLMPDPNTANIDPFFEETTLFMQCDVIEPSDGKGYDRDPRSIAKRAEAYLKSSGM 121

Query: 124 GDTAYFGPEPEFFIFDGVRWGADMSGSFVKIESEEASWSTGAEIEGGNSGHRPTVKGGYF 183
           GDTAYFGPEPEFFIFD +RW   M G FVKIESEEASWSTG + EGGN+GHRPTVKGGYF
Sbjct: 122 GDTAYFGPEPEFFIFDSIRWKIGMDGCFVKIESEEASWSTGEKFEGGNTGHRPTVKGGYF 181

Query: 184 PVPPVDSFQDMRSEMSLILESLGIPVEVHHHEVAGAGQNELGTKFSTLVERADWTQTLKY 243
           PVPPVDSFQDMRSEM LILESLGIPVEVHHHEVAGAGQNE+G+KFSTLVERADWTQ +KY
Sbjct: 182 PVPPVDSFQDMRSEMCLILESLGIPVEVHHHEVAGAGQNEIGSKFSTLVERADWTQNMKY 241

Query: 244 VIWNVAHTYGKTATFMPKPLVGDNGSGMHVHQSVWKDGKNLFAGDGYAGLSEFALYYIGG 303
           VIWNVAHTYGKTATFMPKP+VGDNGSGMHVHQSVWKDGKNLFAGDGYAGLS+FALYYIGG
Sbjct: 242 VIWNVAHTYGKTATFMPKPIVGDNGSGMHVHQSVWKDGKNLFAGDGYAGLSDFALYYIGG 301

Query: 304 IIKHAKALNAITNPGTNSYKRLVPGFEAPVKLAYSARNRSASIRIPHVANPKGRRIETRF 363
           IIKHAKALNAITNPGTNSYKRLVPGFEAPVKLAYSARNRSASIRIPHV+NPKGRR+E RF
Sbjct: 302 IIKHAKALNAITNPGTNSYKRLVPGFEAPVKLAYSARNRSASIRIPHVSNPKGRRVEARF 361

Query: 364 PDPLANPYLCFSALLMAGLDGVQNKIHPGEAATKDLYHLPPEEDKLIPTVCASLDEALEH 423
           PDPLANPYLCFSALLMAGLDGVQNKIHPGEAA+KDLYHLPPEED LIPTVCASL+EAL+ 
Sbjct: 362 PDPLANPYLCFSALLMAGLDGVQNKIHPGEAASKDLYHLPPEEDALIPTVCASLEEALDA 421

Query: 424 LDKDREFLTRGGVFTDSMIDAYIELKMQEVQRFRMTTHPIEFDMYYSL 471
           L+KDREFLTRGGVF+D+MIDAYIELKMQEVQRFRMT HP+E+DMYYSL
Sbjct: 422 LNKDREFLTRGGVFSDAMIDAYIELKMQEVQRFRMTAHPVEYDMYYSL 469


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 970,468
Number of extensions: 43173
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 386
Effective length of database: 720,272
Effective search space: 278024992
Effective search space used: 278024992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)