BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3096.p (366 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094185|ref|YP_001099260.1| two-component system sensory hi... 593 e-171 gi|134093420|ref|YP_001098495.1| putative two-component sensor k... 90 1e-19 gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 69 3e-13 gi|134093686|ref|YP_001098761.1| putative C4-dicarboxylate senso... 69 3e-13 gi|134094133|ref|YP_001099208.1| putative response regulator rec... 67 2e-12 >gi|134094185|ref|YP_001099260.1| two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 357 Score = 593 bits (1529), Expect = e-171, Method: Compositional matrix adjust. Identities = 291/357 (81%), Positives = 320/357 (89%) Query: 10 MKTALPSLDGLDLLASAVIILDAKGGIVYANAAAENLLESSFKVLSQQKLSELFLNGKEL 69 MK S GLDLLASAV++L + G I YAN AAENLLE+S KVL+ +L+ELFLN EL Sbjct: 1 MKKPSISFGGLDLLASAVLVLRSDGYIAYANPAAENLLENSNKVLATHRLNELFLNADEL 60 Query: 70 TALFYQAIEHQFADKRLDLVLERANREPLQVHTIVTPLDSLDMPVLLELRENVQQLKLDR 129 +F QA+EHQFADKR DL LER REPLQVH +VT LD+ D+PVL+ELRENVQQLKLDR Sbjct: 61 DVVFQQAVEHQFADKRQDLTLERMGREPLQVHMVVTALDNPDLPVLMELRENVQQLKLDR 120 Query: 130 EERMFDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEAD 189 EER+ DQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERH+KELREYTQVIIKEAD Sbjct: 121 EERLIDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHVKELREYTQVIIKEAD 180 Query: 190 RLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLTIKRDYDLSIPEFRGDK 249 RLQTLVDRLLAPHR HIVGDVNIHEVCERVRSL++AEFP GL I+RDYDLSIPEFRGDK Sbjct: 181 RLQTLVDRLLAPHRSLHIVGDVNIHEVCERVRSLIVAEFPSGLKIRRDYDLSIPEFRGDK 240 Query: 250 EQLIQAVLNIVHNAAQALADRIRAGDAELILRTRVSRQVTLSKVRYRLALDLHIIDNGPG 309 EQLIQAVLNI HNAAQ L+ I++GDAE++LRTR++R VTL+KVRYRLALDLHIIDNGPG Sbjct: 241 EQLIQAVLNIAHNAAQVLSSHIKSGDAEIVLRTRIARNVTLAKVRYRLALDLHIIDNGPG 300 Query: 310 IPPDIQDRIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFRILIPLP 366 IPPDIQDRIFYPLVSGR+GGSGLGLTLAQTFV QHMG+IEC+SRPGCTDFRILIPLP Sbjct: 301 IPPDIQDRIFYPLVSGRDGGSGLGLTLAQTFVQQHMGLIECESRPGCTDFRILIPLP 357 >gi|134093420|ref|YP_001098495.1| putative two-component sensor kinase [Herminiimonas arsenicoxydans] Length = 767 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 38/251 (15%) Query: 136 QSQANKELIRNLAHEIKNPLGGIRGAAQLLELELP----ERHLKELREYTQVIIKEADRL 191 +S A E+ R LAHEIKNPL I+ +A+ L+++L E+ + L T I+ + + Sbjct: 529 RSIAWGEVARRLAHEIKNPLTPIQLSAERLQMKLEGKLNEQDARILERSTATIVNQVSAM 588 Query: 192 QTLVDRLLAPHRHP-HIVGDVNIHEVCERV---------RSLVMAEFPQGLTIKRDYDLS 241 Q +VD + P ++ ++++ + E + R ++ A +GL Sbjct: 589 QRMVDDFRDYAKTPPAVLSPLDLNALIEEILHLYQTGDERDIIHARLAEGL--------- 639 Query: 242 IPEFRGDKEQLIQAVLNIVHNAAQALADRIRAGDAELILRTRVSRQVTLSKVRYRL---- 297 P GD QL Q + N++ NA A+AD+IR I + ++ YR Sbjct: 640 -PLVMGDATQLRQVIHNLLQNAQDAVADQIRQESTARI-------DIITEEIHYRSSDGT 691 Query: 298 ---ALDLHIIDNGPGIPPDIQDRIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRP 354 A+ L I D GPG P I F P ++ + G+GLGL + + + +H G I+ +R Sbjct: 692 VSNAVQLSITDTGPGFSPKILAHAFEPYITSKPRGTGLGLAMVKKIIEEHGGRIDIKNRT 751 Query: 355 GCTDFRILIPL 365 ++ I L Sbjct: 752 STNGAKVAILL 762 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 69.3 bits (168), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 91/326 (27%), Positives = 144/326 (44%), Gaps = 65/326 (19%) Query: 80 QFADKRLDLVLERANREPLQVHT----IVTPLDSLDM---------PVLLELRENVQQLK 126 QF DL+L R +RE Q+ T ++T +D L ++L+LRE + L Sbjct: 28 QFRQTIADLLL-RIDREAEQLRTKTADLLTQVDELQEVTKSKQVLEALVLQLREANENLV 86 Query: 127 L------DREERMFDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREY 180 L D + + + +E + LAHE+++PL I AA LL ++ H L + Sbjct: 87 LAAFGAQDMQAKAESANHRQEEFLSMLAHELRSPLAPIAMAADLLG-KITTAH-PMLPKL 144 Query: 181 TQVIIKEADRLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEF-------PQGLT 233 +I ++ + LVD LL R V+ + + RSL+++E Q Sbjct: 145 YGIISRQVGHMAHLVDDLLDASR-------VSTGNITLQKRSLLLSEIIDSAVETSQPFI 197 Query: 234 IKRDYDLSI--PE----FRGDKEQLIQAVLNIVHNAAQALADRIRAGDAELILRTRVSRQ 287 +R+ L+I PE GD +L QA N++ NA + T V Sbjct: 198 NQRNQQLTITLPEDTVVINGDLVRLAQAFANLIINATKF---------------TPVDGH 242 Query: 288 VTLSKVRYRLALDLHIIDNGPGIPPDIQDRIFYPLVSG------REGGSGLGLTLAQTFV 341 + +S + + I DNG GI PDIQ IF G +GG G+GL+L +T V Sbjct: 243 IDISAQVLADVVKVSIKDNGMGIAPDIQPFIFDLFRQGPHSLDRSQGGLGIGLSLVRTVV 302 Query: 342 HQHMGVIECDSRP-GC-TDFRILIPL 365 H G + S GC ++F +++P+ Sbjct: 303 QMHGGTVSVYSAGLGCGSEFFVVLPI 328 >gi|134093686|ref|YP_001098761.1| putative C4-dicarboxylate sensor protein dctS [Herminiimonas arsenicoxydans] Length = 599 Score = 68.9 bits (167), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 117/264 (44%), Gaps = 32/264 (12%) Query: 119 RENVQQLKLDREERMFDQSQAN----KELIRNLAHEIKNPLGGIR----GAAQLLELELP 170 R+ V+ L ++E++ Q+ A E+ LAHE+ PL I GA LL E P Sbjct: 334 RKRVEDLNRQQQEKL--QASARLATMGEIASTLAHELNQPLAAISSYTTGALNLLASEQP 391 Query: 171 ERHLKELREYTQVIIK---EADRLQTLVDRL--LAPHRHPHIVGDVNIHEVCERVRSLVM 225 + + TQ + K +A R ++ + R P ++I E+ V LV Sbjct: 392 KEATINIEMLTQALEKANAQAQRAGQIIRSVHTFVKKREPMRTA-ISISELIGSVTPLVE 450 Query: 226 AEFPQG-LTIKRDYDLSIPEFRGDKEQLIQAVLNIVHN---AAQALADRIRAGDAELILR 281 + Q +TIK D ++P D+ L Q +LN+ N + Q++A R + Sbjct: 451 LQAQQYFVTIKVDIPAALPAVLADQVLLEQVLLNLTRNGIESMQSVAPEKRILRIAAAID 510 Query: 282 TRVSRQVTLSKVRYRLALDLHIIDNGPGIPPDIQDRIFYPLVSGREGGSGLGLTLAQTFV 341 R V +S I D G GI ++ +R++ P S + G G+GL++ +T + Sbjct: 511 PATPRNVVVS-----------ISDQGHGIASEVAERLYSPFFSTKADGMGMGLSICRTAI 559 Query: 342 HQHMGVI-ECDSRPGCTDFRILIP 364 H G + D+R G T FR +P Sbjct: 560 EFHGGTLTHVDNRGGGTIFRFSLP 583 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] Length = 560 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 37/237 (15%) Query: 137 SQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEADRLQTLVD 196 ++A E + ++HEI+ P+ G+ G +++L L + E REY + A+ L T+++ Sbjct: 186 NRAKSEFLAVMSHEIRTPMNGMLG---MMQLALAQASDVEQREYLETAQYSAEALLTILN 242 Query: 197 RLL--APHRHPHIVGDVNIHEVCERVRSLV--MAEFPQG--LTIKRDYDLSIPEF-RGDK 249 +L + H+ + ++ + V S++ M+ QG L++ + D +P GD Sbjct: 243 DILDFSKLESGHLEFEAVTFDLPKAVDSVIELMSARMQGAALSLNAECDADLPRLLTGDV 302 Query: 250 EQLIQAVLNIVHNAAQALADRIRAGDAELILRTRVSRQVTLSKVRY-----RLALDLHII 304 +L Q +LN++ NA L+ VTL R ++ L +I Sbjct: 303 GRLRQVLLNLIGNA----------------LKFTEQGSVTLKIERLPASGTQIPLRFTVI 346 Query: 305 DNGPGIPPDIQDRIFYPL------VSGREGGSGLGLTLAQTFVHQHMGVIECDSRPG 355 D+G GI + Q R+F +S R GG+GLGL++ + V G I +S PG Sbjct: 347 DSGIGITAEEQTRLFQSFSQADHSISRRFGGTGLGLSICKKIVEMQRGCIGVESTPG 403 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 628,682 Number of extensions: 23838 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 10 Length of query: 366 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 283 Effective length of database: 726,862 Effective search space: 205701946 Effective search space used: 205701946 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)