BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3090.p (299 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093563|ref|YP_001098638.1| LysR family transcriptional reg... 119 2e-28 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 67 2e-12 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 61 5e-11 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 56 3e-09 >gi|134093563|ref|YP_001098638.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 299 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 125/260 (48%), Gaps = 12/260 (4%) Query: 1 MRRRIPSNSSLMAFEAAARHGSFARAAEELALTEGAISRQIGRLEGFLGVTLFERIGNRV 60 M R+P +L AFEAAARHGSFA AAEEL +T A S +I LE F+G LF R G V Sbjct: 1 MASRLPPVHALSAFEAAARHGSFAVAAEELCITPSAFSHRIRLLEDFVGERLFLRDGRSV 60 Query: 61 RLLPHGQRYAGHVRETLERLDRDSQHLMSLPTHGAS----LDIAVSPTFAMRWLIPRLPR 116 L G+RY VR L L LP AS + + V PTFA +P L Sbjct: 61 SLTEFGRRYLDVVRGALSSLAD-----FPLPHRYASTQLKVKVTVPPTFARYLFLPHLHE 115 Query: 117 LAALHPHITVHLAQRMEPFLLAGSGLDAAIHFVHPAWAGMHTYRLLDEVLIPVCHPALLP 176 ALHP I++ + + ++ S D + F + + T +L E + PV PA L Sbjct: 116 FMALHPEISIETYLSVPLYDMSLSETDIEVRFGAGKYPDIVTEKLFREPVFPVASPAYLE 175 Query: 177 EATR--VPALDTLPRLHRRQNHDAWQRYAAQTGISLTHAAQGPRYDLHGMLIEAALAGLG 234 + + VPA D R + WQ + G+ + G R D G+L+EA G G Sbjct: 176 QIGKLNVPA-DLQKAQLLRSALEPWQPWFEMAGLDWQEPSTGLRIDDLGLLLEAVKHGYG 234 Query: 235 VALVPRLYVEGELAQGRLVA 254 VAL + + +A G +V+ Sbjct: 235 VALTRQHFAADMIASGEIVS 254 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 113/260 (43%), Gaps = 26/260 (10%) Query: 11 LMAFEAAARHGSFARAAEELALTEGAISRQIGRLEGFLGVTLFERIGNRVRLLPHGQRYA 70 L FE AR SF+RAAEEL LT+ A+S Q+ +LE G+ LFE++G ++ L P G Sbjct: 53 LKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGTELL 112 Query: 71 GHVRETLERLDRDSQHLMSLP-THGASLDIAVSPTFAMRWLIPR-LPRLAALHPHITVHL 128 + R +++ + G L++AV A + PR L A H +T++L Sbjct: 113 HYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVIS--AGDYFFPRLLVEFARSHQGVTLNL 170 Query: 129 A-QRMEPFL--LAGSGLDAAIHFVHPAWAGMHTYRLLDEVLIPVCHPALLPEA------- 178 + E L LA + D AI V P M T ++E P HP ++ A Sbjct: 171 SVHNREGLLNQLANNLTDLAI-MVRPP-TDMDT---INEPFAP--HPYVIVAAPDHHLVS 223 Query: 179 -TRVPALDTL---PRLHRRQNHDAWQRYAAQTGISLTHAAQGPRYDLHGMLIEAALAGLG 234 +P + TL P + R + D W G + + +A +AG+G Sbjct: 224 KKNIP-MSTLIHEPFVVREKGSDTWHSMEDGFGSRIDDLNIAMEIKSTETIKQAVIAGMG 282 Query: 235 VALVPRLYVEGELAQGRLVA 254 ++ + + EL G L Sbjct: 283 ISFLSAHTISMELQAGSLTV 302 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 61.2 bits (147), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 1/170 (0%) Query: 9 SSLMAFEAAARHGSFARAAEELALTEGAISRQIGRLEGFLGVTLFERIGNRVRLLPHGQR 68 S L F + GS A AA+EL +T ++S+++ +E L V L R R+ L P G+ Sbjct: 5 SDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGEI 64 Query: 69 YAGHVRETLERLDRDSQHLM-SLPTHGASLDIAVSPTFAMRWLIPRLPRLAALHPHITVH 127 Y + L+ Q + T L I+ + F R + P+L A L+P + V Sbjct: 65 YLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDVQ 124 Query: 128 LAQRMEPFLLAGSGLDAAIHFVHPAWAGMHTYRLLDEVLIPVCHPALLPE 177 L P L G DA I F A + ++ D + PA L Sbjct: 125 LHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKN 174 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 55.8 bits (133), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 106/257 (41%), Gaps = 22/257 (8%) Query: 11 LMAFEAAARHGSFARAAEELALTEGAISRQIGRLEGFLGVTLFERIGNRVRLLPHGQRYA 70 L F AA SF AA L + ++R I +LE G LF R +VR+ G+ Sbjct: 8 LRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITAFGEGLL 67 Query: 71 GHVRETLERLD-------RDSQHLMSLPTHGASLDIAVSPTFAMRWLIPRLPRLAALHPH 123 VR LER + D Q +S ++ I + R ++P L R+AA HP Sbjct: 68 DQVRPALERFEDLWRTPGSDQQASLS-----GTVRITAPHSLGTRAVLPALERVAARHPD 122 Query: 124 IT--VHLAQRMEPFLLAGSGLDAAIHFVHPAWAGMHTYRLLDEVLIPVCHPALLPEATRV 181 IT V L+ R+ + G + + F+ + R ++ +P+ L + V Sbjct: 123 ITLDVRLSDRISNTVDEGIDVGIRVGFMRDS---RFVARKAADMKLPIVAAPRLIKKVGV 179 Query: 182 P----ALDTLP-RLHRRQNHDAWQRYAAQTGISLTHAAQGPRYDLHGMLIEAALAGLGVA 236 P AL +LP + N + + G T AA D M + AALAG+ A Sbjct: 180 PENIDALSSLPATVALDINTGRPWPWHFKAGRQWTPAAPTLVADNADMEMGAALAGIAFA 239 Query: 237 LVPRLYVEGELAQGRLV 253 + +A G+LV Sbjct: 240 QLADYMAAPYIASGKLV 256 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.138 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 581,353 Number of extensions: 24095 Number of successful extensions: 110 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 5 Length of query: 299 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 218 Effective length of database: 733,452 Effective search space: 159892536 Effective search space used: 159892536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)