BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3087.p (555 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 335 5e-93 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 322 3e-89 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 321 5e-89 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 305 4e-84 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 301 4e-83 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 335 bits (858), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 225/527 (42%), Positives = 331/527 (62%), Gaps = 25/527 (4%) Query: 10 FRNTKVATQLMLGFSILILFMAALGGNALYLMG--NINRQLNDVQTNWMPS---VTTAQT 64 +N + +L+L +++ + M + G A+ ++G N L ++ N MPS + + T Sbjct: 2 LKNISIKFRLLL--TMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMT 59 Query: 65 MLAEMRA-VNLAQYRALTANNAQRMQDAKTRIAAALGRYSKAAEQYRHLISTP----EEQ 119 L + RA +NL R + + ++ A+ Y ++ E+++ +S P EE+ Sbjct: 60 RLLQARAGLNLVAMRPHEEGSERILKRAE-------NFYLQSEEEWKKYLSLPIETLEER 112 Query: 120 KAFDELQDLLTRYQQIGDQ-LLQTVEQGNEIEAANIMKDTLYPVRTAMEAKIQQIIRINQ 178 K DE+ RY + +Q L+ + G E +I+ + + P+ ++ +++ + Sbjct: 113 KVADEVTAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQM 172 Query: 179 QGAAQAAEQGQASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLSGQ 238 + AA + Q + II V + G+AI L R + G + + Sbjct: 173 KSAATGYQDSQTLF-HYFRIIAVVGVLLGLIGVAIYAFF---LIRAITGPLKEMLLHFDT 228 Query: 239 IAAGNLAARLELKS-HDTSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDL 297 IA+G+L + +E+KS ++ +LM L M+ +L+ V Q++ S +I A EIA GN+DL Sbjct: 229 IASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDL 288 Query: 298 SQRTEEQAASLEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTM 357 S RTE+QAASLEETASSME+LTSTV+QN +NARQA+ +A++ + VA +G A ++ VV TM Sbjct: 289 SSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTM 348 Query: 358 REMSVSSHQMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSA 417 ++ S+ ++ DII VI+GI+FQTNILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSA Sbjct: 349 DAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 408 Query: 418 AAAKEIKDLIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIG 477 AAAKEIK LI++SVN++ +GTRLV AG T+ E++ S R T +M EI AAS+EQSAGI Sbjct: 409 AAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIE 468 Query: 478 QVNTAIVQMDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLE 524 QVNTAIVQMD+VTQQNAALVEQAAAAA ++ QA L+ VS+F L+ Sbjct: 469 QVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQ 515 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 322 bits (825), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 219/539 (40%), Positives = 326/539 (60%), Gaps = 43/539 (7%) Query: 10 FRNTKVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEM 69 F+N V T+L+ F L + A + G +Y MG IN + D+ + ++ + ++ Sbjct: 2 FKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQELMGLSYIKDANIDL 61 Query: 70 RAVNLA----------QYRALTANNAQR-MQDAKTRIAAA------------LGRYSKAA 106 + A + R L N ++ + AK +A A +Y+ + Sbjct: 62 LFIGRARGNVLLSTTEEERTLNKENIKKYLASAKENLAKAQPLFVSDSAKALFAKYATVS 121 Query: 107 EQYRHLISTPEEQKAFDELQDLLTRYQQIGDQLLQTVEQGNEIEAANIMKDTLYPVRTAM 166 + Y + A + + L R ++ + QT N ++ N++ Sbjct: 122 QDYEKEMWRA---LALADKEPLQQRSAELTTSMAQTRLHANTLD--NVL----------T 166 Query: 167 EAKIQQIIRINQQGAAQAAEQGQASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLG 226 E Q+ +R AAQA + + Y S ++ + + +G+ + +LI+R L QLG Sbjct: 167 ELSKQKEVR-----AAQAHVETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLG 221 Query: 227 GEPGQAMWLSGQIAAGNLAARLELKSHDTSSLMRSLMIMRDQLSGLVGQIKHASSSIHVA 286 GEP A ++ +IAAG+L ++L+S D +S++ ++ MRD L+ +V Q++ + +I A Sbjct: 222 GEPNYAAGVAARIAAGDLTVAIDLRSKDQTSMLFAMREMRDSLASIVSQVRSGTDTITTA 281 Query: 287 AHEIAQGNIDLSQRTEEQAASLEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRG 346 + +IA GN+DLS RTEEQA++LEETASSME++TSTV+QNA N++QAS +A + A RG Sbjct: 282 SGQIAAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRG 341 Query: 347 EAEIAQVVTTMREMSVSSHQMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVA 406 A ++QVV TM ++ SS ++ DII VI+GI+FQTNILALNAAVEAARAGE GRGFAVVA Sbjct: 342 GAVVSQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 401 Query: 407 TEVRALAQRSAAAAKEIKDLIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIA 466 +EVR+LAQRSA+AAKEIK LI +SV ++ +G++LVE AG T+ EI+ R +M +I Sbjct: 402 SEVRSLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDIT 461 Query: 467 AASEEQSAGIGQVNTAIVQMDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLED 525 AA EQSAGI QVN AI QMD+VTQQNAALVE+AAAA+Q++ QA L+E VS+F L++ Sbjct: 462 AAGREQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKLDN 520 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 321 bits (823), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 223/550 (40%), Positives = 333/550 (60%), Gaps = 37/550 (6%) Query: 10 FRNTKVATQLMLGFSILIL---FMAALG-------GNALYLM--GNINRQLNDVQTNWMP 57 F+N K+ +L + F +L++ FM +G A LM I +L W+ Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERL---AQQWIK 59 Query: 58 SVTTAQTMLAEMRAVNLAQYRALTANNAQRMQDAKTRIAAALGRYSKAAEQYRHLISTPE 117 + T A+ R + +Q + I+AA+ SK ++ L+ + E Sbjct: 60 GIETNTVR-------TFARVRTSDPEQDKILQQEMSAISAAV---SKQQDELETLVVSAE 109 Query: 118 EQKAFDELQDLLTRYQQIGDQLLQTVE-QGNEIEAANIMKDTLYPVRTAMEAKIQQIIRI 176 +K + + Y I D ++ E +G E++ N + + + P A ++ ++ Sbjct: 110 GKKLLATVAEKRATYTAIRDDVMNLREARGAELQ--NAIANKMKPAADAYIQSVEAVVNA 167 Query: 177 NQQGAAQAAEQGQASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLS 236 A + Y + ++I + A G+ +A +++R +T+ L A+ ++ Sbjct: 168 QINNFEDAKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLD----YAVSVA 223 Query: 237 GQIAAGNLAARLELKSHD-TSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNI 295 +A+G+L R+ + S D T L+++L M D L+ + Q++ +I A+++IA GN+ Sbjct: 224 RLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNL 283 Query: 296 DLSQRTEEQAASLEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVT 355 DLS RTEEQA+SLEETASSME+LTSTV+QNA+NARQA+ +A + VA +G +++VV Sbjct: 284 DLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVD 343 Query: 356 TMREMSVSSHQMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQR 415 TM ++ S+ ++ DII VI+GI+FQTNILALNAAVEAARAGE GRGFAVVA+EVR+LAQR Sbjct: 344 TMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR 403 Query: 416 SAAAAKEIKDLIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAG 475 SAAAAKEIK LI++SV+++ +G++LV AG T+ E++ S R T +M EI AAS+EQSAG Sbjct: 404 SAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAG 463 Query: 476 IGQVNTAIVQMDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLEDAA----LATL 531 I QVN AI QMDQVTQQNAALVE+AAAAA+++ +QA L +AVS+F L+ A +AT Sbjct: 464 IEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVATR 523 Query: 532 PGVAASGLPA 541 VAAS PA Sbjct: 524 LPVAASNAPA 533 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 305 bits (781), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 219/527 (41%), Positives = 316/527 (59%), Gaps = 17/527 (3%) Query: 12 NTKVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEMRA 71 N K+ +L L F++++L MA++ ++ + + + T M + + + A Sbjct: 5 NLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQA-----TVRMEEAAEQERLSIQWHA 59 Query: 72 VNLAQYRALTA----NNAQRMQDAKTRIAAALGRYSKAAEQYRHLISTPEEQKAFDELQD 127 N A TA N + Q + + A +K + LI + E +K + D Sbjct: 60 GNSANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGD 119 Query: 128 LLTRYQQIGDQLLQTVEQGN---EIEAANIMKDTLYPVRTAMEAKIQQIIRINQQGAAQA 184 T Y I ++ + G+ E EA I+ + P +Q ++ Q +A Sbjct: 120 KRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFLEA 179 Query: 185 AEQGQASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLSGQIAAGNL 244 + Y ++ A +A L+SR +TR L A+ ++ +A G+L Sbjct: 180 KTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLE----YAVEVARTVAGGDL 235 Query: 245 AARLELKSHD-TSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDLSQRTEE 303 R+E+ S D T L+++L M D L V +++ +I A+++IA GN+DLS RTEE Sbjct: 236 RNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEE 295 Query: 304 QAASLEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTMREMSVS 363 QA+SLEETASSME+LTSTV+QNA+NARQA+ +A + + VA +G ++QVV TM +++ S Sbjct: 296 QASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSS 355 Query: 364 SHQMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAAAAKEI 423 + ++ DII VI+GI+FQTNILALNAAVEAARAGE GRGFAVVA+EVR LAQRSAAAAKEI Sbjct: 356 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 415 Query: 424 KDLIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIGQVNTAI 483 K LI +SV+++ G++LV AG T+ E++ S R T +M EI AAS+EQSAGI QVN AI Sbjct: 416 KTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAI 475 Query: 484 VQMDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLEDAALAT 530 QMDQVTQQNAALVE+AAAAA+++ +QA L EAVS+F L+ A +T Sbjct: 476 GQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAAST 522 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 301 bits (772), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 220/521 (42%), Positives = 315/521 (60%), Gaps = 12/521 (2%) Query: 12 NTKVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEMRA 71 N + T+L L +L L A+G L +G N L V + ++ + + A Sbjct: 2 NITLKTRLGLVIGLLALISMAVGLLGLNGIGRSNGDLQQVYQHRTVALEKISRIDRLLLA 61 Query: 72 VNLAQYRALTANNAQRMQDAKTRIAAALGRYSKAAEQYRHLISTPEEQKAFDELQDLLTR 131 LA AL +A++ IA ++A +Y P+E++ + R Sbjct: 62 NRLALSEALHDPDAEKTASHTALIAKNAAEITQAWNEYMDGSLLPDERRLAENFAS--HR 119 Query: 132 YQQIGDQLLQT---VEQGNEIEAANIMKD--TLYP-VRTAMEAKIQQIIRINQQGAAQAA 185 + + D L +++G +EA + + L P VR +++A + ++ A A Sbjct: 120 ARMVQDGLFPAAAALQKGQVVEAMQLQQQFQKLVPAVRNSIDA----LRKLQVDEAGLAY 175 Query: 186 EQGQASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLSGQIAAGNLA 245 E Q Y +I A VA + L+ R + QLGGEP A + +IA G+L+ Sbjct: 176 EAAQQRYLTIRNVIATVLGAGAVAATLLGFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLS 235 Query: 246 ARLELKSHDTSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDLSQRTEEQA 305 A + + D +SL+ ++ M+ L+ VG I+ AS +I A+ +IA GNIDLS RTE+QA Sbjct: 236 ATIITRKGDRNSLLAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQA 295 Query: 306 ASLEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTMREMSVSSH 365 +SLEETASSME+LT+TV+QNA +A+QA+ +A + +++A +G +AQVVTTM +S S+ Sbjct: 296 SSLEETASSMEELTATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAG 355 Query: 366 QMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAAAAKEIKD 425 ++ DII VI GI+FQTNILALNAAVEAAR GE GRGFAVVATEVR+LAQRSA AAKEIK Sbjct: 356 RIGDIIGVINGIAFQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKS 415 Query: 426 LIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIGQVNTAIVQ 485 LI++S+ ++ +G LV+ AG T+ EI+ S + T +M EI AS EQ+AGI QVN AI Q Sbjct: 416 LIDDSLEKVGAGATLVDQAGSTMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQ 475 Query: 486 MDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLEDA 526 MD+VTQQNAALVE+AAAAA ++ +QA +L + VS+F LE A Sbjct: 476 MDRVTQQNAALVEEAAAAAGSLQEQACSLVQVVSVFKLEQA 516 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.124 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 741,011 Number of extensions: 23173 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 14 Length of query: 555 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 469 Effective length of database: 716,977 Effective search space: 336262213 Effective search space used: 336262213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)