BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3084.p
         (296 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096419|ref|YP_001101494.1| carboxyphosphonoenolpyruvate ph...   184   5e-48
gi|134094896|ref|YP_001099971.1| isocitrate lyase [Herminiimonas...    82   3e-17

>gi|134096419|ref|YP_001101494.1| carboxyphosphonoenolpyruvate
           phosphonomutase or methylisocitrate lyase [Herminiimonas
           arsenicoxydans]
          Length = 293

 Score =  184 bits (467), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 110/280 (39%), Positives = 156/280 (55%), Gaps = 6/280 (2%)

Query: 10  FRQAVKEESPLQVIGAINANHALLAKRAGFRAIYLSGGGVAAGSLGLPDLGISSLDDVLT 69
            R  V     L V GA NA  A +    GF A+Y++G GV     GLPD G   L+++  
Sbjct: 12  LRDKVYARRGLLVPGAFNALSARVIADLGFEALYITGAGVTNMYFGLPDQGFIGLNELAD 71

Query: 70  DVRRITDVCDLPLLVDVDTGFGASAFNVARTVKSMIKFGAAAMHIEDQVGAKRCGHRPNK 129
              RI D  D+P++VD DTGFG +A NV  T++++ + GA A+ +EDQV  KRCGH   K
Sbjct: 72  HTARIRDAVDIPIIVDADTGFG-NALNVRHTIRTLERAGADAVQLEDQVAPKRCGHFNGK 130

Query: 130 EIVSKQEMVDRIKAAVDARTDDNFVIMARTDALAVEGLEAAVERAVACVEAGADMIFPEA 189
           E++S  EMV +I AAVDAR+++  +IMARTDA +V G + A+ERA    EAGAD++F EA
Sbjct: 131 EVISCAEMVGKIHAAVDARSNEGMLIMARTDARSVHGFDDALERAARYSEAGADILFVEA 190

Query: 190 ITDLAMYQQFAHAVKVPILANITEFGSTPLFTVEELKGADVGLVLYPLSAFR----AMNK 245
                  ++   A+  P L N+   G TP+F+ +EL G   G+VLY  +A +     M K
Sbjct: 191 TETADEIRRLPQALDKPQLVNLVIGGKTPIFSADELSGLGYGIVLYANAALQGAVAGMQK 250

Query: 246 AAENVYQAIRRDGTQKNVVDTMQTRMELYDRIDYHSYEQR 285
           A   V +   R     N V     R  L ++  +   E++
Sbjct: 251 AL-TVLRDTHRLDEDPNFVTPFAERQRLVNKPLFDQLEKK 289


>gi|134094896|ref|YP_001099971.1| isocitrate lyase [Herminiimonas
           arsenicoxydans]
          Length = 443

 Score = 82.0 bits (201), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 128/313 (40%), Gaps = 70/313 (22%)

Query: 12  QAVKEESPLQVIGAINANHALLAKRAGFRAIYLSGGGVA-----AGSLGLPDLGISSLDD 66
           +    E  +  +GA+  N A+   +AG +AIYLSG  VA     AG +  PD  +   + 
Sbjct: 56  EMCNNEPFVNSLGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEM-YPDQSLYPANS 114

Query: 67  VLTDVRRIT-------------DVCDL----PLLVDVDTGFGASAFNVARTVKSMIKFGA 109
           V   V+RI              D  D+    P++ D + GFG    N    +KSMI+ GA
Sbjct: 115 VPMVVKRINNTFQRADQIQWSEDSGDIDFFAPIVADAEAGFGG-VLNAYELMKSMIEAGA 173

Query: 110 AAMHIEDQVGA-KRCGHRPNKEIVSKQEMVDRIKAAVDAR--TDDNFVIMARTDALAVE- 165
           A +H EDQ+ + K+CGH   K +V  +E V+++ AA  A        +++ARTDA A + 
Sbjct: 174 AGVHFEDQLASVKKCGHMGGKVLVPTREAVEKLNAARLAADVCGTTTLVIARTDAEAADL 233

Query: 166 ---------------------------GLEAAVERAVACVEAGADMIFPE-AITDLAMYQ 197
                                      G + AV R +A      DM++ E    DL   +
Sbjct: 234 LTSDVDENDQPFLTGERTVEGFYKTRSGFDQAVSRGLAYAPY-VDMLWCETGKPDLRFAK 292

Query: 198 QFAHAVKVPILANITEFGSTPLFTV-------------EELKGADVGLVLYPLSAFRAMN 244
           QFA A+       +  +  +P F               +EL           L+ F ++N
Sbjct: 293 QFADAIHAKFPGKMLAYNCSPSFNWRKNLDDATIATFQKELGAMGYKFQFITLAGFHSLN 352

Query: 245 KAAENVYQAIRRD 257
            +  N+     R+
Sbjct: 353 YSMFNLAHGYARN 365


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 411,550
Number of extensions: 12899
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 215
Effective length of database: 733,452
Effective search space: 157692180
Effective search space used: 157692180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)