BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3083.p
         (384 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096420|ref|YP_001101495.1| methylcitrate synthase [Hermini...   722   0.0  
gi|134094979|ref|YP_001100054.1| type II citrate synthase [Hermi...   175   4e-45

>gi|134096420|ref|YP_001101495.1| methylcitrate synthase
           [Herminiimonas arsenicoxydans]
          Length = 382

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/384 (89%), Positives = 364/384 (94%), Gaps = 2/384 (0%)

Query: 1   MSEQQAAGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDVADSCEFEEIAHLL 60
           MSEQ  AGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILD+ADSCEFEEIA+LL
Sbjct: 1   MSEQ--AGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDIADSCEFEEIAYLL 58

Query: 61  VHGKLPTAAELRAYKAKLKALRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVLPEKD 120
           VHGKLPTA EL+AYK KLK++RGLPANVKAALEWLPAASHPMDVMRTGVS LGC+LPEKD
Sbjct: 59  VHGKLPTAPELKAYKTKLKSMRGLPANVKAALEWLPAASHPMDVMRTGVSVLGCMLPEKD 118

Query: 121 DHNTPGARDIADRLMASLGSMLLYWYHYSHNGKRIEVETDDDSIGAHFLHLLHGEKPSEA 180
           DHN P ARDIADRLMASLGS+LLYWYHYS++GKRIEVETDDDSIGAHFLHLLHGEKPS  
Sbjct: 119 DHNAPDARDIADRLMASLGSILLYWYHYSNHGKRIEVETDDDSIGAHFLHLLHGEKPSAL 178

Query: 181 WEKAMHTSLILYAEHEFNASTFTGRVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEI 240
           WEKAMHTSLILYAEHEFNASTFT RVIA TGSDMYSAITGAIGALRGPKHGGANE AFE 
Sbjct: 179 WEKAMHTSLILYAEHEFNASTFTARVIASTGSDMYSAITGAIGALRGPKHGGANEFAFET 238

Query: 241 QKRYDNPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSKEAGSTKMFD 300
           QKRY++PDEAEADI+RRVENKEVVIGFGHPVYTI+DPRNKVIKEVAR LS++A S KMFD
Sbjct: 239 QKRYESPDEAEADIKRRVENKEVVIGFGHPVYTIADPRNKVIKEVARTLSRDADSMKMFD 298

Query: 301 IAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRIDN 360
           IAERLETVMWD KKMF NLDW+SAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRIDN
Sbjct: 299 IAERLETVMWDSKKMFANLDWYSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRIDN 358

Query: 361 KIIRPSANYVGPEDLKFVPIGKRK 384
           KIIRPSA+YVGPEDL FVP+ +RK
Sbjct: 359 KIIRPSAHYVGPEDLAFVPLARRK 382


>gi|134094979|ref|YP_001100054.1| type II citrate synthase
           [Herminiimonas arsenicoxydans]
          Length = 437

 Score =  175 bits (443), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 197/375 (52%), Gaps = 23/375 (6%)

Query: 24  NTALCTVGKTGNDLHYRGYDILDVADSCEFEEIAHLLVHGKLPTAAELRAYKAKLKALRG 83
           N+ +  +     +L YRGY I  +A  C+F E ++LL+ G+LP AA+ + + A +     
Sbjct: 60  NSTITYIDGDKGELLYRGYPIEQLAVHCDFLEASYLLLKGELPNAAQKKEFVATVTRHTM 119

Query: 84  LPANVKAALEWLPAASHPMDVMRTGVSALGCVLPEKDDHNTPGARDI-ADRLMASLGSML 142
           L   ++         +HPM V+   V AL     +  D +    R++ A RL+A + +++
Sbjct: 120 LHEQMQFFFRGFRRDAHPMSVLVGTVGALSSFYHDSLDISDAHHREVSAIRLIAKMPTLV 179

Query: 143 LYWYHYSHNGKRIEVETDDDSIGAHFLHLLHGEKPSEAWE------KAMHTSLILYAEHE 196
              Y YS  G+      +D S  A+F+H++    PSE ++      +A+   LIL+A+HE
Sbjct: 180 AMSYKYS-VGQPFVYPRNDLSYSANFMHMMFS-TPSEEYKINDVLVRALDRILILHADHE 237

Query: 197 FNASTFTGRVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQKR---YDNPDEAEAD 253
            NAST T R+   +G++ ++ I   I  L GP HGGANE A  + K     DN  E  A 
Sbjct: 238 QNASTSTVRLSGSSGANPFACIAAGIACLWGPAHGGANEAALNMLKEIGSVDNIPEFLAK 297

Query: 254 IRRRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSKEAG--STKMFDIAERLETVMWD 311
           ++ +    + ++GFGH VY   DPR K+++E   ++ +E G     +F +A  LE V  +
Sbjct: 298 VKDKNSGIK-LMGFGHRVYKNFDPRAKLMRETCHEVLEELGLHDDPLFKLAMALEKVALE 356

Query: 312 -----IKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRID--NKIIR 364
                 +K++PN+D++S +    +G+P ++FT +F +ART GW A   E   D   KI R
Sbjct: 357 DEYFVSRKLYPNVDFYSGIVQSALGIPVSLFTGIFAMARTVGWVAQWNEMISDPEQKIGR 416

Query: 365 PSANYVGPEDLKFVP 379
           P   Y+G E  + VP
Sbjct: 417 PRQLYIG-EKARDVP 430


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 776,501
Number of extensions: 32778
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 301
Effective length of database: 726,862
Effective search space: 218785462
Effective search space used: 218785462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)