BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3078.p
         (255 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095562|ref|YP_001100637.1| putative exodeoxyribonuclease I...   400   e-113
gi|134093450|ref|YP_001098525.1| putative nuclease [Herminiimona...    85   4e-18

>gi|134095562|ref|YP_001100637.1| putative exodeoxyribonuclease III
           [Herminiimonas arsenicoxydans]
          Length = 237

 Score =  400 bits (1028), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 185/234 (79%), Positives = 204/234 (87%)

Query: 20  KWLEENPVDVLCLQETKLTDDKFPAAEIAAAGYLVEFSGQKTYNGVAILSRHPMNDVVKN 79
           +WL +NPVDVLCLQETK  D+KFP AEI AAGY V F+GQKTYNGVAILSRHP+ DV KN
Sbjct: 3   QWLVDNPVDVLCLQETKTVDEKFPVAEIEAAGYQVAFTGQKTYNGVAILSRHPITDVTKN 62

Query: 80  NPLFPDEQQRIIAATIEGVRYVCAYIPNGQSLDSEKYPYKLNWLAALHEWLAQEKASNPR 139
           NPL  DEQQRIIA TI+G+R VCAY+PNGQS DS+KY YKLNWL ALHEWLAQE+  +P 
Sbjct: 63  NPLLDDEQQRIIAGTIQGIRIVCAYVPNGQSPDSDKYIYKLNWLKALHEWLAQEQQQHPE 122

Query: 140 LALLGDYNIAPEDRDVHDPVAWQGQVLVSEPEREAFRKLQALGLTDSYRLFEQPEKMYSW 199
           LALLGDYNIAPEDRDVHDP AW GQVLVSEPER AF +LQ +G TD++R+FEQPEK+YSW
Sbjct: 123 LALLGDYNIAPEDRDVHDPAAWAGQVLVSEPERAAFVRLQEMGFTDAFRMFEQPEKLYSW 182

Query: 200 WDYRQMGFRLNRGLRIDHILLSEELVPRCTACVIDKVPRKWEQPSDHAPVIATL 253
           WDYRQMGFRLNRGLRIDHILLS  L  RC+ACVIDKVPRKWEQPSDH PVIAT+
Sbjct: 183 WDYRQMGFRLNRGLRIDHILLSAPLAARCSACVIDKVPRKWEQPSDHTPVIATI 236


>gi|134093450|ref|YP_001098525.1| putative nuclease [Herminiimonas
           arsenicoxydans]
          Length = 259

 Score = 84.7 bits (208), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 14/260 (5%)

Query: 1   MKIATWNVNSLKVRLPQ-VLKWLEENPVDVLCLQETKLTDDKFPAAEIAAAGYL--VEFS 57
           +KI + N+N ++    +   +W+  +  D +C+QE K  +       +   GY     ++
Sbjct: 2   LKIVSANLNGIRSAAKKGFFQWMARHSADYICVQELKAQEADMTPDFLTPEGYFGYFHYA 61

Query: 58  GQKTYNGVAILSRHPMNDV--VKNNPLFPDEQQRIIAATIEGVRYVCAYIPNGQSLDSEK 115
            +K Y+G  +  +   ++V    N P F D + R +      +  +  Y P+G S   E+
Sbjct: 62  EKKGYSGAGVYCKTKPDNVQIGFNCPEF-DAEGRYVQCDFGNLSVISVYCPSGSS-GEER 119

Query: 116 YPYKLNWLAALHEWLAQEKASNPRLALLGDYNIAPEDRDVHDPVAWQGQVLVSEPEREAF 175
              K  ++      L + K+      + GD+NIA  + D+ +    +        ERE  
Sbjct: 120 QQAKFRFMDVFLPHLLELKSQGREFVICGDWNIAHNEIDLKNYKGNRKNSGFLPEEREWL 179

Query: 176 -RKLQALGLTDSYRLFE--QPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPRCTACV 232
            R    +GL D YR       E+ Y+WW  R   +  N G RID+ + +  L  R  A  
Sbjct: 180 TRVFDEVGLVDVYRRLHPGTTEECYTWWSNRGQAYAKNVGWRIDYQVATPSLAARAHAAE 239

Query: 233 IDKVPRKWEQPSDHAPVIAT 252
           I KV    E+ SDHAP+  T
Sbjct: 240 IYKV----ERFSDHAPLTIT 255


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 525,457
Number of extensions: 20786
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 175
Effective length of database: 736,747
Effective search space: 128930725
Effective search space used: 128930725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)