BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3076.p
         (255 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096242|ref|YP_001101317.1| hypothetical protein HEAR3087 [...    71   5e-14

>gi|134096242|ref|YP_001101317.1| hypothetical protein HEAR3087
           [Herminiimonas arsenicoxydans]
          Length = 481

 Score = 70.9 bits (172), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 116/267 (43%), Gaps = 15/267 (5%)

Query: 2   KNYFAAL---ILACGSLSVQ--AQQVAPSDSATDPLQLQDRITGDLGAG-LYRLDRND-L 54
           K YF+ +   +L C  L+    A   A + +A+ P        G  G G + R++R+  +
Sbjct: 13  KQYFSPVRKTVLHCALLACAFPAAWTAHAQTASSPFNEFMTAPGSAGLGFVTRVERSPYV 72

Query: 55  KRRSETLALPYAYFDYGRFFARVDTFGIKTARMGYGYLELAGRVNVEGFDADH------G 108
              +    LP   ++  RFF   +  G+K A      +++  R  +EGF  D       G
Sbjct: 73  GGGNRKDLLPLYLYEGERFFLHANRIGVKFAPDEDHRVDVFLRRRLEGFPEDEQPAALSG 132

Query: 109 LHRRSNPIPLGLGTYQETPFGAFFLNVFRDFNT-SHGTLAEAIYAAQVDLGRVSIYPEAG 167
           +  RS  + LG+      P+G    ++  D ++ S G      Y+     GR ++ P   
Sbjct: 133 MAARSTGVDLGVTYRYNQPWGTLHASLLHDVSSVSDGNELALEYSYDWRSGRWALRPSVS 192

Query: 168 VEYRSSSYNDYYFGVSASESAASGLRQYSVGSSTSPIFGLAADVPLSGDWHLNLHWRRKW 227
           V  R S  N+YY+GV A E+ A+    Y+ GS T+    L     L+  W L        
Sbjct: 193 VSMRDSKLNNYYYGVLAGEATAA-RPAYAPGSGTNVALNLYGSYNLTERWRLLGGVSVTA 251

Query: 228 LDNTVSDSPLVRRRTDDTAIVALSYHF 254
           LD+ + DSP+VR+    +  V  SY F
Sbjct: 252 LDSRIKDSPIVRKGLQPSFFVGASYDF 278


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 510,730
Number of extensions: 21855
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 175
Effective length of database: 736,747
Effective search space: 128930725
Effective search space used: 128930725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)