BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3075.p (368 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094653|ref|YP_001099728.1| N-ethylmaleimide reductase, FMN... 349 1e-97 gi|134093305|ref|YP_001098380.1| putative NADH:FMN flavin oxidor... 118 6e-28 gi|134095710|ref|YP_001100785.1| putative FMN oxidoreductase [He... 111 6e-26 >gi|134094653|ref|YP_001099728.1| N-ethylmaleimide reductase, FMN-linked [Herminiimonas arsenicoxydans] Length = 352 Score = 349 bits (896), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 188/360 (52%), Positives = 237/360 (65%), Gaps = 11/360 (3%) Query: 8 LASDLFQPVQLGAVQLQNRIVMAPLTRSRALAGD-VPTDLAAEYYAQRAGAGLIIAEATQ 66 + + LF P+++G + L NR++MAPLTRSRA+ G VP DL EYY QRA AGLI++EAT Sbjct: 1 MTNHLFTPIKVGDITLPNRVIMAPLTRSRAVGGGRVPNDLMVEYYVQRASAGLILSEATA 60 Query: 67 ISPQGKGYAWTPGIYNQAQVAGWKKITDAVHAKGGRIFLQLWHVGRISHPDLQPGHALPV 126 ++PQG GYA TPGI++ QVAGWKK+TDAVH GG I LQLWHVGRISHP G LPV Sbjct: 61 VTPQGVGYADTPGIWSDEQVAGWKKVTDAVHKAGGLISLQLWHVGRISHPMFLNGE-LPV 119 Query: 127 APSAIRPEGNAFTESGFKPFVEPRALEIAELPGIVEQYKTAAQLSMQAGFDGVEIHAANG 186 APSAI+PEG+ +V PRALE+ E+PGIV Y+ A+ + AGFDGVE+H ANG Sbjct: 120 APSAIQPEGHVSIVRPQVGYVTPRALELDEIPGIVAAYRKGAENAKLAGFDGVEVHGANG 179 Query: 187 YLLDQFLRDKSNQRTDAYGGSIENRARLLLEVVEAVTSVIPSERVGIRLSPISPANDIAD 246 YLLDQFL+ +NQRTD YGGSIENRARL+LEVV+ V + RVG+ L+P ++D++D Sbjct: 180 YLLDQFLQSSTNQRTDIYGGSIENRARLMLEVVDVCIEVWGAGRVGLHLAPRGDSHDLSD 239 Query: 247 SNPEALFRYVVQQLNRYQLVYLHVVEGATGGPREVEGGFDL-QVLRELFQGLYIANNGYD 305 + P F YV ++ + + ++ RE G L L++ F G+YIAN Sbjct: 240 ATPAETFGYVAAEMGKRGIAFICA--------RESLGENRLGPQLKKAFGGVYIANEQMT 291 Query: 306 LEMAVQARARNLADLVAFGRLWIANPDLVQRFKAGAALAQINQATLYGGGAEGYTDYPPL 365 E A A AD VAFG+L+IANPDL +R K A L T Y AEGYTDYP L Sbjct: 292 KETAANVIATGEADAVAFGKLFIANPDLPRRLKDNAPLNPARPETFYSPTAEGYTDYPAL 351 >gi|134093305|ref|YP_001098380.1| putative NADH:FMN flavin oxidoreductase [Herminiimonas arsenicoxydans] Length = 370 Score = 118 bits (295), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 136/247 (55%), Gaps = 36/247 (14%) Query: 10 SDLFQPVQLGAVQLQNRIVMAPLTRSRALAGDVPTDLAAEYYAQR------AGAGLIIAE 63 S LF P L ++ L NRIV++P+ + A G A E++ +GAG+++ E Sbjct: 2 SPLFSPYTLRSLTLPNRIVVSPMCQYSANNG-----AATEWHMIHLGHLALSGAGMLMIE 56 Query: 64 ATQISPQGKGYAWTPGIYNQAQVAGWKKITDAV--HAKGGRIFLQLWHVGRISHPDL--Q 119 AT + P+G+ G+++ A A + A+ H+K + +QL H GR + + + Sbjct: 57 ATAVEPEGRITPKDLGLWDDATEAALVPVLAAIRKHSKIA-VVMQLGHAGRKASSKVPWE 115 Query: 120 PGHALPVA--------PSAI-RPEGNAFTESGFKPFVEPRALEIAELPGIVEQYKTAAQL 170 G L VA PSA+ + EG VEP AL+ A L + + + AA+ Sbjct: 116 GGQQLSVADGGWMSYAPSAVSQKEGE----------VEPLALDAAGLRRLRDAFVLAAKR 165 Query: 171 SMQAGFDGVEIHAANGYLLDQFLRDKSNQRTDAYGGSIENRARLLLEVVEAVTSVIPSER 230 + + G DG+E+HAA+GYLL QFL +N RTD YGGS+ENR R LEV +AV +V P+++ Sbjct: 166 AERLGIDGLEVHAAHGYLLHQFLSPIANHRTDEYGGSLENRMRFPLEVFDAVRAVFPADK 225 Query: 231 -VGIRLS 236 VGIR+S Sbjct: 226 PVGIRVS 232 >gi|134095710|ref|YP_001100785.1| putative FMN oxidoreductase [Herminiimonas arsenicoxydans] Length = 368 Score = 111 bits (277), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 126/240 (52%), Gaps = 11/240 (4%) Query: 12 LFQPVQLGAVQLQNRIVMAPLTRSRALAGDVPTDLAAEYYAQRA--GAGLIIAEATQISP 69 LF+P++L ++L+NRI + P+ + A G +P+ +Y RA GAGL+I EAT +S Sbjct: 4 LFEPLKLRDIKLRNRIGIPPMCQYSAQDG-MPSAWHTVHYGSRAIGGAGLMILEATAVSE 62 Query: 70 QGKGYAWTPGIYNQAQVAGWKKITDAVHAKGGRIFLQLWHVGRISHPDL--QPGHALPVA 127 G+ GI+ A + I +QL H GR + L Q +LP Sbjct: 63 DGRISTGDLGIWKDAHIEPLSHIARFATENECAAAIQLAHAGRKAGVALGWQEQGSLPPN 122 Query: 128 PSAIRPEGNAFTESGFKPFVEPRALEIAELPGIVEQYKTAAQLSMQAGFDGVEIHAANGY 187 R + G K F P L + E+ IV + +AA+ ++ AGF +EIHAA+GY Sbjct: 123 EGGWRTHAPSPIAFGPK-FATPVELNVNEITTIVATFASAARRALAAGFPVIEIHAAHGY 181 Query: 188 LLDQFLRDKSNQRTDAYGGSIENRARLLLEVVEAVTSVIPSER-VGIRLSPISPANDIAD 246 LL QFL SN+RTD YGGS NR R+L EV+ +V +V P + +RLS A D AD Sbjct: 182 LLHQFLSPLSNKRTDDYGGSFINRTRMLREVITSVRAVWPDRLPMLVRLS----ATDWAD 237 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 750,551 Number of extensions: 32624 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 3 Length of query: 368 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 285 Effective length of database: 726,862 Effective search space: 207155670 Effective search space used: 207155670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)