BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3072.p
         (376 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095577|ref|YP_001100652.1| hypothetical protein HEAR2400 [...   432   e-122

>gi|134095577|ref|YP_001100652.1| hypothetical protein HEAR2400
           [Herminiimonas arsenicoxydans]
          Length = 347

 Score =  432 bits (1110), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 274/347 (78%), Gaps = 1/347 (0%)

Query: 30  MLIKILGQAAGGQVASQDVLALIGFQSLNYMPIILILTGFISVLLVMTRSYQDSEIVVWF 89
           MLI+ILGQAAGG+VAS DV+ALIGF +LNY+PIIL L GF+SVLLV+TRSYQDSE+VVWF
Sbjct: 1   MLIRILGQAAGGKVASADVVALIGFSALNYLPIILNLAGFMSVLLVVTRSYQDSEMVVWF 60

Query: 90  SCGMSLTRWITPVLRFGWPIMALVAVLSFVVTPWANEQSSEYRSRFEQREDIARVSPGKF 149
           + G+SL RWI PVL F  PI+ +  +LS  +TPW+N+QS+ Y+ R+  REDIARVSPGKF
Sbjct: 61  ASGLSLARWIPPVLVFALPIVVMTTLLSLFLTPWSNQQSAIYKERYANREDIARVSPGKF 120

Query: 150 QESAAANRIFFVEGISGDASKVRNIFVNTINQDGKNSVVVAKEGETTVDADGEKFVVMQK 209
           QES++++R+FFVEG++GD+SKVRNIFV+++ ++GK SVVVAKEG   +D  G+KF+VM +
Sbjct: 121 QESSSSDRVFFVEGVAGDSSKVRNIFVSSV-RNGKTSVVVAKEGTVEIDPAGDKFLVMHQ 179

Query: 210 GRRYDGSPSLPDFQIVDFERYGLLIGNQSQTAAGERSARALQMNELLAKRDGFARGELLW 269
           GRRYDG P+  DFQ+++F+RYG+L+ +QSQ   G+ SARAL   ELL  R+ F  GELLW
Sbjct: 180 GRRYDGVPTQSDFQLMEFDRYGVLVASQSQALVGDTSARALTTQELLRNRNNFNDGELLW 239

Query: 270 RIALPLMALALMLLAIPLSFVNPRAGRSLGLLVALLLFVVYSNTVSVFQASVAQQRMSFV 329
           R++LPLM + LMLLAIPL FVNPR GRS  LL+AL LFV YSN +S  QA V Q R +F+
Sbjct: 240 RVSLPLMGVLLMLLAIPLGFVNPRGGRSANLLIALFLFVFYSNMLSYAQAIVVQNRAAFM 299

Query: 330 MAWWPVHLIVALLIVGMFALRLNINHPFHPSRLWSRVRRAMTFQREA 376
           MAWWPVHL+  L++V  F+ RL +N  +HP  +W+ ++RA   QR A
Sbjct: 300 MAWWPVHLVALLVVVVFFSWRLKVNSRYHPLVVWAMLKRAYFAQRAA 346


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 575,967
Number of extensions: 20367
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 293
Effective length of database: 726,862
Effective search space: 212970566
Effective search space used: 212970566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)