BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3071.p
         (376 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095576|ref|YP_001100651.1| hypothetical protein HEAR2399 [...   480   e-137

>gi|134095576|ref|YP_001100651.1| hypothetical protein HEAR2399
           [Herminiimonas arsenicoxydans]
          Length = 382

 Score =  480 bits (1235), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 225/382 (58%), Positives = 294/382 (76%), Gaps = 8/382 (2%)

Query: 1   MRVIQRYFTTEITRSVFFALAAFLALFAFFEMMGQLEQVGRNGYKLQQAVFYVLMGLPGN 60
           M+++Q+YF  EI RSV F L AFLALF FF+++ +L+ VG  GYK+Q A+ +VL+ +PG 
Sbjct: 1   MKILQKYFAAEIGRSVIFVLIAFLALFGFFDLIAELKAVGHGGYKIQHALLFVLLSMPGY 60

Query: 61  VYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGMAAKVLLRIGVGFAVITIIFGEL 120
           +YELMP A LIGTI+TLSQ AARSEFTIMR SSMSTGMA  +L++IG+ FA++T + GE 
Sbjct: 61  LYELMPIAALIGTIWTLSQFAARSEFTIMRASSMSTGMAGLMLIKIGLVFAIVTFVVGEF 120

Query: 121 IAPKASEWAEKLRLQAQGSSMSSQFRSGMWAKDVIKDHGLEGNVTGSRFINIQTVQPDGR 180
           + P +S  AEK+R   QG S+S +FRSG+W KD+I+ +G +G   GSRF+N++TVQPDG+
Sbjct: 121 VVPASSNMAEKIRTLNQGGSLSQEFRSGLWTKDMIRSNGKDGEAIGSRFLNVRTVQPDGQ 180

Query: 181 IEGVKLYELDTDFHMARMVTAKSGMYEGDHQWVLSDVVQSDFTGDKD-------RKITEP 233
           +  +K+YE + +FH+  ++TA    Y+GD+ W+LS+  Q++F G+ +         IT  
Sbjct: 181 LTDLKIYEFNRNFHLTALITAARADYQGDNVWLLSNGSQAEF-GETELMGAAVATDITTA 239

Query: 234 VKTMKLAQMKLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLEANNQRTDRYEIAFWKKI 293
           + T   A   L+SEVTPEILSV F+DP +MSAYDL+ YT++L  NN+ T RYEIA WKK+
Sbjct: 240 ISTRNFASKPLISEVTPEILSVGFSDPAKMSAYDLVNYTQYLAENNRETARYEIALWKKV 299

Query: 294 VYPLSIFVMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFM 353
           VYP ++FVM+ALALPFAYLHFR+GGVSLKIFTGIMIGV FQLINSLFSHLGLLNTWP F 
Sbjct: 300 VYPFAVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLLNTWPPFA 359

Query: 354 TAALPSLLFMVLAIGSLWWVER 375
           TA LPSLLF++ AIG+L WVER
Sbjct: 360 TAILPSLLFLLAAIGALLWVER 381


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 648,304
Number of extensions: 24871
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 293
Effective length of database: 726,862
Effective search space: 212970566
Effective search space used: 212970566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)