BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3069.p
         (253 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095574|ref|YP_001100649.1| uroporphyrin-III C-methyltransf...   302   1e-83
gi|134093708|ref|YP_001098783.1| uroporphyrin-III C-methyltransf...   129   2e-31

>gi|134095574|ref|YP_001100649.1| uroporphyrin-III
           C-methyltransferase [Herminiimonas arsenicoxydans]
          Length = 243

 Score =  302 bits (773), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/231 (64%), Positives = 187/231 (80%)

Query: 23  GMVWLVGSGPGAADLLTVRAARLLAQAEIVLHDALVTPDILALCPQAVLVSVGKRSGQRS 82
           G V+L+G+GPGA DL+TVR AR+LAQA++VLHDALVTP++L LCPQA  +SVGKRSGQRS
Sbjct: 9   GKVYLIGAGPGAIDLITVRGARILAQADVVLHDALVTPEMLTLCPQAEKISVGKRSGQRS 68

Query: 83  TAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEMRALEEHNIPFEIVPGITAALAA 142
           TAQ  INQ L+E A++Y+ +VRLKGGDPMLFGRADEE++ALE H I  EIVPGIT A AA
Sbjct: 69  TAQIAINQLLIECAEKYQLIVRLKGGDPMLFGRADEELQALETHGIAVEIVPGITTAFAA 128

Query: 143 ASAAKRPLTRRGIARSVSLFTSSTGVDEPNEVRMPNGDTLVQYMGGREATATAQRLLALG 202
           A+A ++PLT+RG+ARS++ FTSST  ++P+++ +P+ DTL+QYMGGREA  TAQ+LL  G
Sbjct: 129 AAATQQPLTKRGVARSIAFFTSSTAPNQPDQLTLPDCDTLIQYMGGREAIITAQKLLEQG 188

Query: 203 HAPETPVVVVENCSRADQHIYHLQLAGLEAGLQACSGPVLVMIGPALADRN 253
            +P  PVVVVENCS   Q I  + L  LE GL  C GPVLVMIG ALA+R+
Sbjct: 189 RSPRLPVVVVENCSLESQRIMRMTLHELEQGLGECQGPVLVMIGEALAERS 239


>gi|134093708|ref|YP_001098783.1| uroporphyrin-III
           C-methyltransferase [Herminiimonas arsenicoxydans]
          Length = 266

 Score =  129 bits (323), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 132/235 (56%), Gaps = 10/235 (4%)

Query: 20  EHPGMVWLVGSGPGAADLLTVRAARLLAQAEIVLHDALVTPDILALCPQAV--LVSVGKR 77
           E  G V+LVG+GPG  DLLT++A + +A+A+++L D LV P++L    QA+  +VSVGKR
Sbjct: 6   EQFGKVFLVGAGPGDPDLLTIKAVKAIARADVILIDDLVNPEVLQYA-QAIARIVSVGKR 64

Query: 78  SGQRSTAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEMRALEEHNIPFEIVPGIT 137
            G + T Q  I + ++  AQ  + VVRLKGGDP +FGR  EE   L+   +  E++ GI+
Sbjct: 65  GGCKQTPQEFIERLMLFEAQAGQCVVRLKGGDPFIFGRGGEERDHLQAEGVDVEVINGIS 124

Query: 138 AALAAASAAKRPLTRRGIARSVSLFTSSTGVD---EPNEVRMPNGD-TLVQYMGGREATA 193
           + LAA ++   PLT R  ++ V +F +  G +    P+   +   + TLV YMG    T 
Sbjct: 125 SGLAAPASIGVPLTHRDWSQGV-IFITGHGKNAESNPDWYTLAKLNLTLVIYMGVARCTE 183

Query: 194 TAQRLLALGHAPETPVVVVENCSRADQHIYHLQLAGLEAGL--QACSGPVLVMIG 246
               LL  G A  TPV V+++ +   Q      L+ L   L   A   P +++IG
Sbjct: 184 IQAALLEGGKAGRTPVAVIQSATGVAQRQLITILSELPQALAKSAIGSPAIIVIG 238


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 436,588
Number of extensions: 16155
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 173
Effective length of database: 736,747
Effective search space: 127457231
Effective search space used: 127457231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)