BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3068.p (443 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095573|ref|YP_001100648.1| ATP-sulfurylase subunit 1 [Herm... 742 0.0 gi|134096335|ref|YP_001101410.1| elongation factor Tu [Herminiim... 77 1e-15 gi|134096323|ref|YP_001101398.1| elongation factor Tu [Herminiim... 77 1e-15 >gi|134095573|ref|YP_001100648.1| ATP-sulfurylase subunit 1 [Herminiimonas arsenicoxydans] Length = 443 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/442 (79%), Positives = 402/442 (90%) Query: 1 MNAAATQAQLAQASAQSHERGLLRFITAGSVDDGKSTLIGRLLFDSKGIFADQLDAISRA 60 MNA + + + + ERGLLRFITAGSVDDGKSTLIGRLLFDSKGIFADQLDA+SRA Sbjct: 1 MNAVLAEQAITRTGGNAAERGLLRFITAGSVDDGKSTLIGRLLFDSKGIFADQLDAMSRA 60 Query: 61 KHKRTVGDTVDLSLLTDGLEAEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVT 120 KHKRTVGDT+DLSLLTDGLEAEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVT Sbjct: 61 KHKRTVGDTIDLSLLTDGLEAEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVT 120 Query: 121 GASTADAVIILVDVSKVKLGDDGSVELLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQ 180 GASTADAVIIL+DVSKVKLGDDGSVELL QTKRHSTIAHLLQI+HVIVAVNKMDLV+YDQ Sbjct: 121 GASTADAVIILIDVSKVKLGDDGSVELLIQTKRHSTIAHLLQIEHVIVAVNKMDLVNYDQ 180 Query: 181 TVYDRIVGAYQQFAQQLGLQDVHAIPLSALAGDNVVEASARMPWYQGPTLITLLESLSVY 240 VYDRIV AY +FA+ LGL+D+H IPLSALAGDNVV ++ WYQGPTLI LLESLSVY Sbjct: 181 KVYDRIVAAYVEFAKTLGLKDIHPIPLSALAGDNVVTRGDKLGWYQGPTLIELLESLSVY 240 Query: 241 EDAHEEAFRFPVQLVARHNGHEANDFRGYMGRIEAGKVARGDKLVVLPSGQSATVKDIQT 300 +++H+E FRFPVQLVARHNGHEA+DFRGYMGRIEAGKV +GDKLVV PSGQ+ATVKDIQT Sbjct: 241 DESHDEPFRFPVQLVARHNGHEADDFRGYMGRIEAGKVRKGDKLVVQPSGQTATVKDIQT 300 Query: 301 LDGSLESAAAGQSVTILLDEYLDISRGDLLASAAQPSTILKSVNADVCWLSEEPLDLRRK 360 DGS+E A GQS+T+LL+E++DISRGD+L++A +P+ +LK+V+AD+CWLSEEPLDLRRK Sbjct: 301 FDGSIEQAVVGQSITLLLEEHVDISRGDMLSAADRPAELLKTVHADLCWLSEEPLDLRRK 360 Query: 361 YWLKHTTKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAADAYQDIRA 420 YWLKHTT+QV ARV K+++LLDINTQE+R A+ +KLN IA +++NVQQP+AADAY IR+ Sbjct: 361 YWLKHTTRQVGARVTKIESLLDINTQEKRAADEVKLNGIASVTINVQQPLAADAYDAIRS 420 Query: 421 TGAFILIDEVSHQTVAAGMIRI 442 TGAFILIDEV+HQTVAAGMIR+ Sbjct: 421 TGAFILIDEVTHQTVAAGMIRL 442 >gi|134096335|ref|YP_001101410.1| elongation factor Tu [Herminiimonas arsenicoxydans] Length = 396 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 102/407 (25%), Positives = 173/407 (42%), Gaps = 71/407 (17%) Query: 27 TAGSVDDGKSTLIGRLLFDSKGIFADQLDAISRAKHKRTVGDTVDLSLLTDGLEAEREQG 86 T G VD GK+TL AI+ K+ G+ + + E E+ +G Sbjct: 17 TIGHVDHGKTTLTA---------------AIATVLSKKFGGEAKGYDQIDNAPE-EKARG 60 Query: 87 ITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVTGASTADAVIILVDVSKVKLGDDGSVE 146 ITI+ ++ + T R + D PGH Y +NM+TGA+ D I++ + DG Sbjct: 61 ITINTSHVEYETTTRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAA------DGP-- 112 Query: 147 LLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQTVYDRIVGAYQQFAQQLGLQDVHAIP 206 + QT+ H +A + + ++IV +NK D+VD D + + + ++ + Sbjct: 113 -MPQTREHILLARQVGVPYIIVFLNKCDMVD-DAELLELVEMEVRELLSKY--------- 161 Query: 207 LSALAGDN--VVEASARMPWY--QGP--------TLITLLESLSVYEDAHEEAFRFPVQL 254 GD+ +++ SA++ QGP L + E A + AF PV+ Sbjct: 162 --EFPGDDLPIIKGSAKLALEGDQGPLGEAAILALADALDSYIPTPERAVDGAFLLPVED 219 Query: 255 VARHNGHEANDFRGYM--GRIEAGKVARGDKL--VVLPSGQSATVKDIQTLDGSLESAAA 310 V +G RG + GRIE G V G+ L V + Q T ++ L+ A Sbjct: 220 VFSISG------RGTVVTGRIERGIVKVGESLEIVGIRDTQVTTCTGVEMFRKLLDQGQA 273 Query: 311 GQSVTILL--DEYLDISRGDLLASAAQPSTIL--KSVNADVCWLSEEPLDLRRKYWLKHT 366 G +V +LL + D+ RG +L A+P +I K ++ LS++ R + + Sbjct: 274 GDNVGVLLRGTKREDVERGQVL---AKPGSIKPHKHFTGEIYVLSKDE-GGRHTPFFNNY 329 Query: 367 TKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAAD 413 Q R V +++ + E + D I+V + PIA + Sbjct: 330 RPQFYFRTTDVTGSIELPKDK----EMVMPGDNVSITVMLINPIAME 372 >gi|134096323|ref|YP_001101398.1| elongation factor Tu [Herminiimonas arsenicoxydans] Length = 396 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 102/407 (25%), Positives = 173/407 (42%), Gaps = 71/407 (17%) Query: 27 TAGSVDDGKSTLIGRLLFDSKGIFADQLDAISRAKHKRTVGDTVDLSLLTDGLEAEREQG 86 T G VD GK+TL AI+ K+ G+ + + E E+ +G Sbjct: 17 TIGHVDHGKTTLTA---------------AIATVLSKKFGGEAKGYDQIDNAPE-EKARG 60 Query: 87 ITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVTGASTADAVIILVDVSKVKLGDDGSVE 146 ITI+ ++ + T R + D PGH Y +NM+TGA+ D I++ + DG Sbjct: 61 ITINTSHVEYETTTRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAA------DGP-- 112 Query: 147 LLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQTVYDRIVGAYQQFAQQLGLQDVHAIP 206 + QT+ H +A + + ++IV +NK D+VD D + + + ++ + Sbjct: 113 -MPQTREHILLARQVGVPYIIVFLNKCDMVD-DAELLELVEMEVRELLSKY--------- 161 Query: 207 LSALAGDN--VVEASARMPWY--QGP--------TLITLLESLSVYEDAHEEAFRFPVQL 254 GD+ +++ SA++ QGP L + E A + AF PV+ Sbjct: 162 --EFPGDDLPIIKGSAKLALEGDQGPLGEAAILALADALDSYIPTPERAVDGAFLLPVED 219 Query: 255 VARHNGHEANDFRGYM--GRIEAGKVARGDKL--VVLPSGQSATVKDIQTLDGSLESAAA 310 V +G RG + GRIE G V G+ L V + Q T ++ L+ A Sbjct: 220 VFSISG------RGTVVTGRIERGIVKVGESLEIVGIRDTQVTTCTGVEMFRKLLDQGQA 273 Query: 311 GQSVTILL--DEYLDISRGDLLASAAQPSTIL--KSVNADVCWLSEEPLDLRRKYWLKHT 366 G +V +LL + D+ RG +L A+P +I K ++ LS++ R + + Sbjct: 274 GDNVGVLLRGTKREDVERGQVL---AKPGSIKPHKHFTGEIYVLSKDE-GGRHTPFFNNY 329 Query: 367 TKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAAD 413 Q R V +++ + E + D I+V + PIA + Sbjct: 330 RPQFYFRTTDVTGSIELPKDK----EMVMPGDNVSITVMLINPIAME 372 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 775,763 Number of extensions: 31214 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 3 Length of query: 443 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 358 Effective length of database: 720,272 Effective search space: 257857376 Effective search space used: 257857376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)