BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3066.p
         (243 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095571|ref|YP_001100646.1| adenosine phosphosulfate reduct...   387   e-109

>gi|134095571|ref|YP_001100646.1| adenosine phosphosulfate reductase
           [Herminiimonas arsenicoxydans]
          Length = 242

 Score =  387 bits (993), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 178/238 (74%), Positives = 206/238 (86%), Gaps = 2/238 (0%)

Query: 1   MANPGLQDLIAKTQATLERIAAEYAPAALASSLAAEDMVLTDLILRGKLQDRISIFTLET 60
           M       L+A TQ TL+ +A ++APA  ASSLAAED VLTD+ILR KL   I+IFTLET
Sbjct: 1   MNETDFATLVATTQKTLQHVADQFAPAVFASSLAAEDQVLTDMILRSKLP--ITIFTLET 58

Query: 61  GRLHKETVGMIDRIRETYDYEVAPYRPQPEAVETYVQKNGANAFYDSVELRKECCHIRKM 120
           GRLH ET+G++DRI+ETY  E+A YRPQPEAV+ YV++NG NAFY+SV++RKECC IRK+
Sbjct: 59  GRLHAETLGVLDRIKETYGVEIALYRPQPEAVDAYVRQNGLNAFYESVDMRKECCRIRKV 118

Query: 121 EPLNRALQGKASWVTGQRRAQSVTRAELHVQERDEAHGMEKFNPLADWSEQDVWDYIRAN 180
           EPLNRALQG  SW+TGQRRAQS TRAELHVQE+D+AH M KFNPLADWSE DVW YIR+N
Sbjct: 119 EPLNRALQGNRSWITGQRRAQSSTRAELHVQEQDDAHDMVKFNPLADWSEADVWHYIRSN 178

Query: 181 DVPYNPLHDQGYPSIGCEPCTRAIQPGEDIRAGRWWWENPDSKECGLHVVDGKLVRIK 238
           +VPYNPLHD+GYPSIGCEPCTRAIQPGED+RAGRWWWENP+SKECGLHVVDGKL+RIK
Sbjct: 179 NVPYNPLHDKGYPSIGCEPCTRAIQPGEDVRAGRWWWENPESKECGLHVVDGKLIRIK 236


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 448,888
Number of extensions: 17209
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 164
Effective length of database: 740,042
Effective search space: 121366888
Effective search space used: 121366888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)