BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3064.p
         (565 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095569|ref|YP_001100644.1| sulfite reductase [Herminiimona...   991   0.0  
gi|134093703|ref|YP_001098778.1| nitrite reductase [Herminiimona...    69   5e-13

>gi|134095569|ref|YP_001100644.1| sulfite reductase [Herminiimonas
           arsenicoxydans]
          Length = 564

 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/565 (81%), Positives = 515/565 (91%), Gaps = 1/565 (0%)

Query: 1   MYRYDQYDHLIVKERVAQYRDQVRRRLSDELAEDEFRILRLQNGLYLQRHAYMLRIAIPY 60
           MYRYDQYDH IVKER+AQYRDQVRRRLSDELAEDEFRILRLQNGLY+QRHAYMLR+A+PY
Sbjct: 1   MYRYDQYDHQIVKERIAQYRDQVRRRLSDELAEDEFRILRLQNGLYMQRHAYMLRVAVPY 60

Query: 61  GMLASNQLRKFAEIAVKYDRGYGHFTTRQNIQFNWIKLEESPEILEQLASVEMHAIQTSG 120
           G+L+S Q+R F  IA KYDRGYGHFTTRQNIQFNWI LEE+P+IL +LASVEMHAIQTSG
Sbjct: 61  GLLSSAQMRMFGHIARKYDRGYGHFTTRQNIQFNWINLEETPDILTELASVEMHAIQTSG 120

Query: 121 NCIRNTTSDELAGVAADEIVDPRPYAELIREWSTFHPEFAYLPRKFKIAISGAAEDRAAT 180
           NCIRNTTSDELAGVAADEIVDPRPYAE+IREWSTFHPEFAYLPRKFKI I+GA EDR AT
Sbjct: 121 NCIRNTTSDELAGVAADEIVDPRPYAEIIREWSTFHPEFAYLPRKFKIGINGAVEDRVAT 180

Query: 181 AVHDIGLHVIKNEAGEVGFRVLVGGGMGRTPILGSVIRDFLPWQHAMSYLEAILRVYNQY 240
           A+HDIGLHVIKNE GE+GFRVLVGGGMGRTPI+GSVI +FLPWQH M+YLEAILRVYNQY
Sbjct: 181 AIHDIGLHVIKNEQGEIGFRVLVGGGMGRTPIIGSVICEFLPWQHIMTYLEAILRVYNQY 240

Query: 241 GRRDNMYKARIKILVKAIGPEEFARQVEAEWADIKDGPSTLTEEELQRVAKFFTDPAYET 300
           GRRDN+YKARIKILVKAIG +E+ RQVE EW DIKDGP TLT EEL RVA FFT PAY  
Sbjct: 241 GRRDNIYKARIKILVKAIGIDEYRRQVEQEWLDIKDGPGTLTAEELSRVAAFFTMPAYAA 300

Query: 301 LPAVDAEYERLKAEDRGFANWIKRNVKAHKKAGYAAVILSLKKPGVPPGDITADQMNFVA 360
           LPA DAE+E+ K E++ F NW+ RNVK HK  GYAAV+LSLKK GVPPGD TA+Q++F+A
Sbjct: 301 LPATDAEFEKNKTENKAFKNWLSRNVKQHKVPGYAAVVLSLKKTGVPPGDATAEQLDFMA 360

Query: 361 DLADQYSFGELRVTHEQNLVLADVKQSELYALWQAAKSHGLATPNIGLLTDIICCPGGDF 420
           +LAD+YSFGELRVTHEQN+VLADV+ ++LYA+W+AAKSHGLATPNIGLLTD+ICCPGGDF
Sbjct: 361 ELADRYSFGELRVTHEQNVVLADVRIADLYAVWEAAKSHGLATPNIGLLTDMICCPGGDF 420

Query: 421 CSLANAKSIPIAQAIAEKFENIDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDGS 480
           CSLANAKS+PIA AIAE+F+N+DFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDG+
Sbjct: 421 CSLANAKSLPIAAAIAERFDNLDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDGA 480

Query: 481 EWYQVSLGGAQGNESSVGKIIGPSFSATQMPTVIDRLLQVYVKQRTEEERFIDTVRRIGV 540
           EWYQVS+GGAQGNESS+GKIIGPSFSA QMPTVI+RLLQVYV+ R E+ERFIDT RRIG+
Sbjct: 481 EWYQVSIGGAQGNESSIGKIIGPSFSAYQMPTVIERLLQVYVRDRIEDERFIDTARRIGI 540

Query: 541 TPFKEFVYATPIRSAEYVAGEDANA 565
            PFKE VYATPI+  +   GEDA A
Sbjct: 541 APFKEHVYATPIKVVQ-ATGEDAYA 564


>gi|134093703|ref|YP_001098778.1| nitrite reductase [Herminiimonas
           arsenicoxydans]
          Length = 809

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 26/231 (11%)

Query: 325 NVKAH---KKAGYAAVILSLKKPGVPPGDITADQMNFVADLADQYSFGELRVTHEQNLVL 381
           N +AH   +K G  +VI     P +  G+ ++ ++  +AD+ D++    ++VT  Q + L
Sbjct: 554 NERAHANIQKDGTFSVI-----PRMWGGETSSSELRRIADVVDKFKIPTVKVTGGQRIDL 608

Query: 382 ADVKQSELYALWQAAKSHGLATPNIGL-----LTDIICCPGGDFCSLANAKSIPIAQAIA 436
             VK+ +L A+W     H L  P+ GL     L  +  C G ++C      S  + Q + 
Sbjct: 609 LGVKKEDLRAVW-----HDLGMPS-GLAYAKGLRTVKTCVGSEWCRFGTQDSTRMGQQLE 662

Query: 437 EKFENIDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDGSEWYQVSLGGAQGNESS 496
            +   +   H    ++L +SGC   C    + ++GI+GVD   S W ++ +GG  G ++ 
Sbjct: 663 HQLARMYAPH---KVKLAVSGCPRNCAESGIKDVGIIGVD---SGW-EIYVGGNGGIKTE 715

Query: 497 VGKIIGPSFSATQMPTVIDRLLQVYVKQRTEEERFIDTVRRIGVTPFKEFV 547
           V +      +  ++       LQ+Y ++    ER +  + R+G+   K+ V
Sbjct: 716 VAEFFVKLKTHEEVLEYAGAFLQLYREEGWYLERTVHYLARVGLEHAKQKV 766


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,111,241
Number of extensions: 46703
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 565
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 478
Effective length of database: 713,682
Effective search space: 341139996
Effective search space used: 341139996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)